| Haplotype |
Case |
Control |
Ca-Freq |
Co-Freq |
Ca-D' |
Ca-r2 |
Co-D' |
Co-r2 |
Odds-R |
95%Lo |
95%Hi |
Pc |
| TACCACG |
181 |
244 |
22.9% |
30.8% |
0.8825 |
0.03714 |
0.9021 |
0.04237 |
1 |
1 |
1 |
|
| TGCCACA |
64 |
78 |
8% |
9.8% |
-0.009883 |
7.75e-5 |
-0.03606 |
0.001167 |
1.11 |
0.76 |
1.62 |
|
| TACCGCA |
59 |
108 |
7.4% |
13.6% |
1 |
0.01344 |
1 |
0.01829 |
0.74 |
0.51 |
1.07 |
|
| TACCATA |
52 |
80 |
6.5% |
10.1% |
1 |
0.01227 |
1 |
0.01291 |
0.88 |
0.59 |
1.31 |
|
| CGCCGCA |
41 |
34 |
5.2% |
4.3% |
1 |
0.4007 |
1 |
0.384 |
1.63 |
1.00 |
2.67 |
|
| TGCCATG |
41 |
33 |
5.2% |
4.2% |
-0.02038 |
0.000205 |
0.5242 |
0.001439 |
1.68 |
1.03 |
2.76 |
|
| TACCGCG |
31 |
6 |
3.9% |
0.76% |
1 |
0.01066 |
1 |
0.000914 |
6.28 |
2.62 |
15.06 |
0.00003 |
| TACCACA |
22 |
28 |
2.8% |
3.5% |
-0.002983 |
2.422e-6 |
0.6362 |
0.001765 |
1.09 |
0.61 |
1.95 |
|
| TACCATG |
21 |
5 |
2.7% |
0.6% |
1 |
0.004763 |
1 |
0.0007987 |
4.65 |
1.84 |
11.76 |
0.004 |
| TGCCGCG |
19 |
17 |
2.4% |
2.1% |
-0.1551 |
0.005829 |
0.179 |
8.718e-5 |
1.50 |
0.76 |
2.95 |
|
| TACTGTG |
19 |
1 |
2.4% |
0.13% |
1 |
0.004202 |
1 |
9.68e-5 |
15.76 |
2.44 |
101.70 |
0.00007 |
| TATCACA |
16 |
29 |
2% |
3.7% |
1 |
0.003412 |
1 |
0.00432 |
0.76 |
0.40 |
1.43 |
|
| TACTGCA |
14 |
0 |
1.8% |
0% |
1 |
0.003412 |
1 |
0.00432 |
16.04 |
1.61 |
159.83 |
0.0007 |
| CGCCGTG |
13 |
20 |
1.6% |
2.5% |
1 |
0.005063 |
1 |
0.004677 |
0.87 |
0.43 |
1.79 |
|
| TACCGTA |
12 |
2 |
1.5% |
0.25% |
1 |
0.1223 |
0.7455 |
0.1629 |
6.99 |
1.56 |
31.37 |
0.02 |
| TATCATG |
11 |
15 |
1.4% |
1.9% |
1 |
0.002475 |
1 |
0.002209 |
1.03 |
0.47 |
2.26 |
|
| TATCATA |
10 |
2 |
1.3% |
0.25% |
1 |
0.002279 |
1 |
0.0002206 |
5.82 |
1.29 |
26.19 |
|
| CGCCACA |
10 |
12 |
1.3% |
1.5% |
0.009883 |
7.75e-5 |
0.03606 |
0.001167 |
1.10 |
0.47 |
2.58 |
|
| TACTACA |
10 |
31 |
1.3% |
3.9% |
1 |
0.0025315 |
1 |
0.002338 |
0.46 |
0.22 |
0.96 |
|
| TGCCGTA |
9 |
5 |
1.1% |
0.6% |
1 |
0.001878 |
1 |
0.000662 |
2.32 |
0.77 |
7.04 |
|
| CGTCGTG |
7 |
7 |
0.9% |
0.9% |
0.6348 |
0.0373 |
0.7977 |
0.05621 |
1.36 |
0.47 |
3.92 |
|
| TACCGTG |
7 |
5 |
0.9% |
0.5% |
1 |
0.00137 |
1 |
0.0007303 |
1.73 |
0.56 |
5.34 |
|
| TACTATG |
0 |
13 |
0% |
1.6% |
1 |
5.987e-13 |
1 |
0.001956 |
0.10 |
0.01 |
1.61 |
0.05 |
| Other |
123 |
17 |
15.5% |
2.1% |
------- |
-------- |
-------- |
------ |
----- |
------ |
------ |
-------- |
The table shows counts and percentages of estimated haplotypes. P-values (Pc) are corrected for 23 haplotype comparisons. Odds Ratio (OR) and corresponding 95%
confidence intervals are given, whereas Global D’ for cases and controls are 0.7182 and 0.7922, respectively |
