200 HSP

( D= 0, GRR2 = 1.5 )

 

With parental genotypes

Without parental genotypes

Model

Method

P(M)=P(D)=0.3

P(M)=P(D)=0.5

P(M)=P(D)=0.3

P(M)=P(D)=0.5

Recessive

PHAST

0.0507

0.0484

0.0514

0.0429

PDT

0.0507

0.0484

NA

NA

FBAT

0.0503

0.0494

NA

NA

Additive

PHAST

0.0477

0.0499

0.0520

0.0427

PDT

0.0477

0.0499

NA

NA

FBAT

0.0476

0.0517

NA

NA

Dominant

PHAST

0.0493

0.0464

0.0539

0.0455

PDT

0.0493

0.0464

NA

NA

FBAT

0.0489

0.0498

NA

NA

Table 1: Type I error rates for data simulated from 200 concordant halfsibpair (HSP) families under different genetic models.