200 HSP

( D= 0, GRR2 = 1.5, P(M)=P(D)=0.3)

# 1 IBD families

# 0 IBD families

PHAST

PDT

FBAT

200

0

0.0450

0.0450

0.1179

150

50

0.0491

0.0491

0.0835

100

100

0.0497

0.0497

0.0499

50

150

0.0503

0.0503

0.0211

0

200

0.0486

0.0486

0.0023

Table 3: Type I error rates for data simulated from 200 concordant halfsibpair (HSP) families under different ratios of 1 IBD to 0 IBD families.