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Genes |
Accession Number |
1=5’-TaqMan forward primer - 3’
2= 5’-TaqMan revers primer - 3’
3=5’-TaqMan(FAM)-probe-(TAMARA)- 3’ |
References |
1 |
Beta Actin |
NM_001101 |
1=CCACCCCACTTCTCTCTAAGGA |
Housekeeping gene |
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2=CATAATTTACACGAAAGCAATGCTATC |
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3=TGGCCCAGTCCTCTCCCAAGTCC |
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2 |
Ribosomoal S9 |
U14971 |
1=GAGACGACGAGGAGGAGGATTA |
Housekeeping gene |
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2=GCAGGAAAACGAGACAATCCA |
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3=TCCACCTGTCCCTCCTGGGCTG |
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3 |
IF2b |
U23028 |
1=TGGAGTTGGGATGTGGAAGTG |
Housekeeping gene |
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2=CTGCCGGCCTGCTTAG |
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3=TCCTCCCTAGGCAGAAGCTTTGTTCCAT |
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4 |
GAP |
NM_002046 |
1=CATGGCCTCCAAGGAGTAAG |
Housekeeping gene |
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2=GGGACTCCCCAGCAGTGA |
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3=ACCAGCCCCAGCAAGAGCACAAGA |
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5 |
5-hT2B |
X77307 |
1= ATGGGATTAACCCTGCCATGTA |
Shipp et al, 2002 [1] |
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2=GAGAAGCGTATCTAGTAGAATGATTGATGA |
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3=TCCAATGAGGCTCCGAAGTTCAACCAT |
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6 |
h731 |
NM_145341 |
1=CTTTCTTTCAAGGACAGTGTTTTTTGT |
Shipp et al, 2002 [1] |
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2=TCCCAAAGCACAGTATCTCAACAG |
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3=TAAGCTGCTAAAACCCCATGTTGGCTGCT |
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7 |
PKC-b-1 |
BC036472 |
1=CCCTCATCCCCAAACTACTTGA |
Shipp et al, 2002 [1] |
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2=GGCCTTGCTAGAGTGACTGTGTT |
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3=AAGGGCATTTGGCACCACTCTCTGAA |
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8 |
OVGL |
U09550 |
1=CCTAAGCCCCTCTGGTGTCA |
Shipp et al, 2002 [1] |
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2=GAGATTGGCCTATTCTGGTTTTGA |
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3=TTCTAAGTGACATGTTGGAAGCCTTCTCATCC |
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9 |
PKCG |
BC047876 |
1=GCTCCCAATCAGCTTTTGTTCTA |
Shipp et al, 2002 [1] |
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2= GTGGGTCCGAGCCAGACA |
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3= AGCCCGCCTGCCGTGCAT |
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10 |
ZFPC150 |
BC022785 |
1=CCAGTGAAGTTGCTGATGGTATG |
Shipp et al, 2002 [1] |
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2=GGTACAAGGTGAACAACCTTAAGTAACA |
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3=TTGCGGTGTCTCGGCATACCCCT |
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11 |
TLE1 |
M99435 |
1=CAAGGCCAAGCGGACAGA |
Shipp et al, 2002 [1] |
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2=CCAGATCACCCAGAAAGAAAGAA |
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3=AACGGAATCTGCCGACTCACATGACA |
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12 |
MINOR |
U12767 |
1=GGATGACCACACTAGCACAGAAGA |
Shipp et al, 2002 [1] |
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2=CAGCTGGTGGCTTCCTGATT |
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3=TCCTCCCTTGGCGGGAGAGCTCT |
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13 |
ACTA |
J05192 |
1=CCGGAGCGCAAATACTCTGT |
Rosenwald et al, 2002 [5] |
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2=CCCGGCTTCATCGTATTCCT |
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3=ATCGGTGGCTCCATCCTGGCCT |
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14 |
NPM3 |
NM_006993 |
1=GATGACTTCCAGCTCCAACCA |
Rosenwald et al, 2002 [5] |
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2=CTCGCTCTCCTCCTCAGAAACA |
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3=TAACCTTCCGCCTGAAGTCGGGCT |
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15 |
Bcl-6 |
U00115 |
1=CAGACACAGGGACTTGAAGTTGTTACT |
Rosenwald et al, 2002 [5] |
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2=GACACAGCCAAACCCTGTCTC |
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3=TCCCATTCTGCGTCATGCTTGTGTGATAACT |
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16 |
c-myc |
D89667 |
1=GAAACAGGCCGTCATGGAAAT |
Rosenwald et al, 2002 [5] |
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2=CAAAAACTCTCAGGCCTTAGCAGTA |
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3=AGTCAGAAGATTCAGCAGCTCACAGCCCT |
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17 |
HLA-DQ-a |
U77589 |
1=CGCCATCTACAGGAGCAGAA |
Rosenwald et al, 2002 [5] |
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2=AGCAGCTTAAGTCCCAGAGAAAAG |
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3=ACATGACCTAGCACTATTCTCTGGCCCGATT |
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18 |
HLA-DR-a |
K01171 |
1=GCCCTATAGCCACCCCAAGT |
Rosenwald et al, 2002 [5] |
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2=CAGGGAAGCCAGCTAGATGTTAGA |
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3=TGGTTATGCCTCCTCGATTGCTCCGTA |
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19 |
KIAA0233 |
D87071 |
1=GGAGGAGTTGTACGCCAAGCT |
Rosenwald et al, 2002 [5] |
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2=CTTCTCACGAGTCCACTTGATCA |
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3=TCTTCCTCTACCGCTCACCGGAGACC |
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20 |
Urokinase |
U08839 |
1=GGCTCCCAGCCCTACAGACT |
Rosenwald et al, 2002 [5] |
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2=GCTTTTCTCTTCTGCTTCACACAA |
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3=AGTGTGCCGACCTCTCTGGGCCT |
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21 |
BMP6 |
NM_001718 |
1=AGGCAGTGCTCACCTCTTCTTT |
Rosenwald et al, 2002
[5] |
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2=GTACTAGAGCCGGCAGTCCAGA |
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3=CCAGAACGGTTCTTTGACCAGCACATTAA |
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22 |
BCL-2 |
M14745 |
1=TGAGTAAATCCATGCACCTAAACCTTT |
Husson et al, 2002 [6] |
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2=CACTGTCACTCTTGCAAATTCTACCT |
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3=TGGGCCCTCCAGATAGCTCATTTCATT |
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23 |
COL3A1 |
NM_000090 |
1=CAAAATCTGTACATGTCTCCCATCAG |
Husson et al, 2002 [6] |
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2=CAACACATTCTCTATGCTAGTGTGACAA |
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3=TGCCACAGGGATTCTCCTCCTTCATCC |
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24 |
CDC2 |
NM_052987 |
1=CCTGGCAGGACTCCAGATGA |
Husson et al, 2002 [6] |
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2=GGAGCAGGGATCCAGCTCA |
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3=AGCCACAATTGAGGATACCCCGAGCT |
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25 |
Cyclin B |
M25753 |
1=CCTGGCTAAGAATGTAGTCATGGTAA |
Husson et al, 2002 [6] |
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2=GCATGCTTCGATGTGGCATA |
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3=TCAAGGACTTACAAAGCACATGACTGTCAAGAACA |
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26 |
IL2RG |
D11086 |
1=CACCCCTTCATTTGGCATTC |
Husson et al, 2002 [6] |
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2=CGAAAAGGAAGGGCCAGACT |
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3=ACTTGAGAATTACCCTTTTGCCCCGAACAT |
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27 |
Hsp40 |
D49547 |
1=CTGTTCCCTGGAGGCCAGT |
Husson et al, 2002 [6] |
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2=CACTTTGGTCTCATGTTGGCA |
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3=TGCTCAGACCTTTAGACTCATTGTAAGTTGCCA |
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28 |
MLK-3 |
L32976 |
1=GGCTCTCTGGATGCCTTCCT |
Husson et al, 2002 [6] |
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2=GTTTATTTGGCTTCTGGCTTCACT |
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3=CCAGCCAGGGTTGGAGTCTTAGCCTC |
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29 |
HSF1 |
M64673 |
1=CCGTGTCCTGTGGTTTGGTT |
Husson et al, 2002 [6] |
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2=GTTGTGTAAAAATCCAAAATACAATTCTGA |
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3=TCACAGCCACACCTGGACTGACCCT |
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30 |
XPB |
M31899 |
1=CTTAGGCAGGGTACTTCGTTCAA |
Husson et al, 2002 [6] |
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2=GAGGTGGAAGGAAAATGTTATGCT |
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3=CGGCGCTTGGCACCCTTGT |
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31 |
HSP27 |
X54079 |
1=GCAGTCCAACGAGATCACCAT |
Husson et al, 2002 [6] |
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2=CTTTACTTGGCGGCAGTCTCAT |
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3=TCACCTTCGAGTCGCGGGCC |
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32 |
P21CIP1 |
U09579 |
1=CTCTCGGCTCCCCATGTGT |
Husson et al, 2002 [6] |
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2=CATTGTGGGAGGAGCTGTGA |
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3=TGGTTCCCGTTTCTCCACCTAGACTGTAAAC |
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33 |
TNF |
X01394 |
1=AGCTGCCTTGGCTCAGACAT |
Husson et al, 2002 [6] |
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2=GGTCACCAAATCAGCATTGTTTAG |
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3=AGCTGAACAATAGGCTGTTCCCATGTAGCC |
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34 |
YY-1 |
M76541 |
1=AGTGTTAATCAATTTAAACCCATTTTAGTCA |
Husson et al, 2002 [6] |
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2=CAGGTGTTAAAAGGTACAATACATTCTACAAC |
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3=CCAGATGCTGATGTTCAGTGTAATTTCTTTGCCT |
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35 |
ear-2 |
X12794 |
1=CCAGGATGGAGGGTCCAAT |
Husson et al, 2002 [6] |
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2=CCCCACCATCCCACAAGTT |
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3=AGCCTTGTTCCTCAGCACCCCTAGCA |
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36 |
ZFX |
X59738 |
1=CAGGCTTTAAACGGCACGTTA |
Husson et al, 2002 [6] |
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2=CATTATGTGCTGGTTCTTTTCTGAA |
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3=TCCATTCACACGAAAGACTATCCTCACCG |
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37 |
ID2 |
NM_002166 |
1=CGTGAATACCAGAAGGATCCAGTA |
Husson et al, 2002 [6] |
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2=CAGCATTCAGTAGGCTTGTGTCA |
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3=TCAGTCACTTAAATGAAGTCTTTTGGTCAGAAATTACCTT |
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38 |
JUN |
J04111 |
1=GCAGGAATTGGTGGCAGATT |
Husson et al, 2002 [6] |
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2=CAAAGGCCATCTTTTTATCTAGGAA |
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3=ATGTATCCTTCCAATTTGGAATCTTCTCTTTGACA |
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39 |
bsp-1 |
U57456 |
1=GTTCACCTCATAATCCTATTTCATCTGT |
Husson et al, 2002 [6] |
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2=GGCTCCTTTGTCAGTTCTCAATC |
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3=CCTCTGGAAAACTATTGAGCCTTGCATGTACTT |
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All accession numbers were taken from BLAST .