PCR  
Smear Culture Positive negative Not done Total
Positive Positive 72 3 0 75
Negative 2 7 0 9
contaminated 4 - 0 04
Not done - - 6 06
Negative Positive 30 4 0 34
Negative 10 75 0 85
contaminated 04 1 - 05
  Not done - - 18 18
Total   122 90 24 236
Using the culture as the gold standard diagnostic method, PCR has a sensitivity of (93.6%) and specificity of (87.2% ), whereas smear microscopy has a sensitivity of 68.8% and specificity of 90.4%. TB/HIV co- infection was detected in 3 (2.7%) of tested cases whom were negatively smear and only one was positive by culture and PCR.
Table 3: Correlation of PCR result with conventional diagnostic method.