| Tools |
Purpose |
UTR |
Ref |
| MethDB |
Database for DNA methylation data |
http://www.methdb.de |
[54] |
| MethyCancer Database |
Database of cancer DNA methylation data |
http://methycancer.psych.ac.cn/ |
[57] |
| PubMeth |
Database of DNA methylation literature |
http://www.pubmeth.org/ |
[99] |
| NGSmethDB |
Database for DNA methylation data at single-base resolution |
http://bioinfo2.ugr.es/NGSmethDB/gbrowse/ |
[55] |
| DBCAT |
Database of CpG islands and analytical tools for identifying comprehensive methylation profiles in cancer cells |
http://dbcat.cgm.ntu.edu.tw/ |
[100] |
| MethylomeDB |
Database of DNA methylation profiles of the brain |
http://epigenomics.columbia.edu/methylomedb/index.html |
[56] |
| DiseaseMeth |
Human disease methylation database |
http://bioinfo.hrbmu.edu.cn/diseasemeth |
[58] |
| CpG IE |
Identification of CpG islands |
http://bioinfo.hku.hk/cpgieintro.html |
[63] |
| CpG IS |
Identification of CpG islands |
http://cpgislands.usc.edu/ |
[64] |
| CG clusters |
Identification of CpG islands |
http://greallylab.aecom.yu.edu/cgClusters/ |
[68] |
| CpGcluster |
Identification of CpG islands |
http://bioinfo2.ugr.es/CpGcluster |
[67] |
| CpGIF |
Identification of CpG islands |
http://www.usd.edu/~sye/cpgisland/CpGIF.htm |
[101] |
| CpG_MI |
Identification of CpG islands |
http://bioinfo.hrbmu.edu.cn/cpgmi |
[66] |
| CpGProD |
Identification of CpG islands |
http://pbil.univ-lyon1.fr/software/cpgprod.html |
[65] |
| EpiGRAPH |
Genome scale statistical analysis |
http://epigraph.mpi-inf.mpg.de/WebGRAPH |
[71] |
| Galaxy |
General purpose analysis |
http://main.g2.bx.psu.edu/ |
[102] |
| QDMR |
Identification of differentially methylated regions |
http://bioinfo.hrbmu.edu.cn/qdmr. |
[103] |
| Batman |
MeDIP DNA methylation analysis tool |
http://td-blade.gurdon.cam.ac.uk/software/batman |
[23] |
| CisGenome Browser |
A flexible tool for genomic data visualization |
http://biogibbs.stanford.edu/~jiangh/browser/ |
[70] |
| MethVisual |
Visualization and exploratory statistical analysis of DNA methylation profiles from bisulfite sequencing |
http://methvisual.molgen.mpg.de/ |
[104] |
| MethTools |
A toolbox to visualize and analyze DNA methylation data |
http://genome.imb-jena.de/methtools/ |
[105] |
