Inferred Change in Presenilin-1(PSEN-1)expression and itsproduct The interactive genes Sub-cellular processes/Molecular pathways Probable Damaging effect
The mutation might alter the splicing pattern of the transcript; in downstream it alters the protein domain structure due to change in amino acid sequence as the whole exon may be skipped by splicing. APP (Amyloid Precursor Protein) Involved in the amyloid plaque production in brain. Gamma secretase activity of PSEN-1 may be changed, altering amyloid beta production.
Caspases Involved in the proteolytic processing of PSEN-1. Metabolism of PSEN-1 via proteolytic processing may be altered.
PKC
(Phospho kinase C)
Inhibits the caspase cleavage of PSEN-1 by phosphorylating at amino acid residue 346. Proteolytic processing of PSEN-1 and progression of apoptosis may be altered.
CTNNB1
(Beta catenin)
Involved in regulation of apoptosis via cell signaling. Neuronal apoptosis may be modulated.
CTNND2
(Delta catenin)
Critical protein for maintenance of neuronal structure and function. Neuronal apoptosis may be modulated.
CDH2
(Cadherin)
The cadherin-catenin-presenilin-1 complex triggers synaptic loss and make neurones vulnerable to apoptosis. Neuronal apoptosis may be modulated.
MTCH1 (Mitochondrial carrier homolog 1) Its over-expression is responsible for mitochondrial depolarization and apoptosis. Apoptosis may be altered.
NOTCH-1 PSEN-1-Notch1 interaction is necessary for neurogenesis. Neurogenesis may be impaired.
Table 1: Summary of damaging effect of mutation rs201992645 (NG_007386.2:g.66696T>A or NM_000021.3:c.868+37T>A) (ss515119316) of PSEN-1 gene on subcellular processes as inferred from In Silico analysis using the program mutation t@sting.