Odds Ratios
  0.25 1.0* 2.0 3.0 4.0 5.0

 		 Sensitivity False Positive False Positive Sensitivity False Positive Sensitivity False Positive Sensitivity False Positive Sensitivity False Positive
  Mean (Median;Std) Mean (Median;Std) Mean (Median;Std) Mean (Median;Std) Mean (Median;Std) Mean (Median;Std) Mean (Median;Std) Mean (Median;Std) Mean (Median;Std) Mean (Median;Std) Mean (Median;Std)
CPT 0.73
(0.95;0.39)		 0.09
(0.05;0.11)		 0.07
(0;0.10)		 0.64
(0.79;0.38)		 0.08
(0.04;0.11)		 0.86
(>0.99;0.27)		 0.13
(0.11;0.11)		 0.97
(>0.99;0.1)		 0.15
(0.13;0.11)		 0.99
(>0.99;0.08)		 0.16
(0.14;0.10)
FSPT                      
Span = 0.1 0.71
(0.84;0.33)		 0.06
(0.06;0.04)		 0.05
(0.05;0.03)		 0.58
(0.67;0.32)		 0.06
(0.05;0.03)		 0.87
(0.95;0.2)		 0.07
(0.07;0.04)		 0.96
(>0.99;0.09)		 0.08
(0.08;0.03)		 0.98
(>0.99;0.06)		 0.09
(0.09;0.03)
Span = 0.3 0.72
(0.88;0.36)		 0.07
(0.06;0.07)		 0.06
(0.04;0.06)		 0.61
(0.79;0.39)		 0.07
(0.05;0.06)		 0.88
(>0.99;0.25)		 0.10
(0.09;0.07)		 0.97
(>0.99;0.11)		 0.12
(0.11;0.06)		 0.99
(>0.99;0.07)		 0.14
(0.14;0.06)
Span = 0.5 0.70
(0.93;0.38)		 0.08
(0.05;0.09)		 0.06
(0.02;0.08)		 0.65
(0.86;0.40)		 0.08
(0.04;0.09)		 0.80
(>0.99;0.33)		 0.13
(0.12;0.11)		 0.94
(>0.99;0.17)		 0.17
(0.17;0.11)		 0.96
(>0.99;0.16)		 0.21
(0.22;0.11)
Span = 0.7 0.64
(0.98;0.43)		 0.09
(0.03;0.11)		 0.06
(0;0.09)		 0.67
(0.95;0.41)		 0.09
(0.03;0.11)		 0.83
(>0.99;0.32)		 0.16
(0.15;0.13)		 0.92
(>0.99;0.2)		 0.22
(0.23;0.13)		 0.97
(>0.99;0.11)		 0.27
(0.29;0.13)
Span = 0.9 0.68
(>0.99;0.43)		 0.08
(0;0.11)		 0.06
(0;0.10)		 0.61
(0.79;0.43)		 0.08
(0;0.11)		 0.83
(>0.99;0.32)		 0.14
(0.12;0.13)		 0.90
(>0.99;0.24)		 0.19
(0.20;0.13)		 0.96
(>0.99;0.15)		 0.24
(0.26;0.13)
UPT 0.86
(>0.99;0.26)		 0.10
(0;0.15)		 0.05
(0;0.10)		 0.79
(0.91;0.29)		 0.08
(0;0.13)		 0.97
(>0.99;0.12)		 0.15
(0.12;0.15)		 0.99
(>0.99;0.03)		 0.21
(0.23;0.15)		 >0.99
(>0.99;0.04)		 0.26
(0.28;0.14)
*Note that Sensitivity is not meaningful under the null hypothesis
Table 5: Scenario 2 Sensitivity and False Positive Rates of Permutation Test Methods under Alternative Hypotheses.