SNP |
Chr |
Position |
Genea |
Band |
pIGWAS |
Scaled Lasso |
rs11588887 |
1 |
157983786 |
CRP |
q23.2 |
1.39 |
0.99 |
3.49 |
0.99 |
rs1254207 |
1 |
234434850 |
GPR137B |
q42.3 |
-0.36 |
0.84 |
-0.78 |
0.75 |
rs2477586 |
1 |
234451564 |
ERO1LB |
q42.3 |
-0.32 |
0.81 |
-0.61 |
0.73 |
rs1860875 |
7 |
21078168 |
RPL23P8 |
p15.3 |
|
|
0.23 |
0.70 |
rs2390470 |
7 |
21088622 |
RPL23P8 |
p15.3 |
|
|
-0.06 |
0.34 |
rs2192300 |
7 |
121194239 |
PTPRZ1 |
q31.32 |
|
|
-0.14 |
0.81 |
rs1054611 |
12 |
10061428 |
CLEC12B |
p13.2 |
0.10 |
0.78 |
0.09 |
0.66 |
rs4565970 |
12 |
81715248 |
TMTC2 |
q21.31 |
0.03 |
0.56 |
0.01 |
0.52 |
rs12370680 |
12 |
83436479 |
MIR548T |
q21.31 |
0.25 |
0.87 |
0.35 |
0.83 |
rs4393415 |
12 |
102464392 |
STAB2 |
q23.3 |
0.10 |
0.72 |
0.13 |
0.60 |
rs4405407 |
12 |
102466587 |
STAB2 |
q23.3 |
0.04 |
0.60 |
0.03 |
0.40 |
rs1336850 |
13 |
22680577 |
SGCG |
q12.12 |
|
|
-1.19 |
0.86 |
rs622227 |
13 |
27937214 |
FLT1 |
q12.3 |
|
|
1.00 |
0.78 |
rs1058214 |
13 |
38885772 |
LHFP |
q13.3 |
|
|
1.32 |
0.80 |
rs7323630 |
13 |
39747343 |
LINC00548 |
q14.11 |
|
|
-0.16 |
0.59 |
rs4473069 |
13 |
43009971 |
ENOX1 |
q14.11 |
|
|
-0.03 |
0.40 |
rs2786712 |
13 |
44192569 |
LINC00330 |
q14.11 |
|
|
-0.18 |
0.56 |
rs1330476 |
13 |
81854308 |
SLITRK1 |
q31.1 |
-0.04 |
0.61 |
|
|
rs9531358 |
13 |
81964898 |
SLITRK1 |
q31.1 |
-0.14 |
0.89 |
-3.55 |
1.00 |
rs2777825 |
13 |
83099526 |
SLITRK1 |
q31.1 |
|
|
-1.20 |
0.83 |
rs9531489 |
13 |
83152986 |
SLITRK1 |
q31.1 |
|
|
-0.57 |
0.62 |
rs9546479 |
13 |
83154395 |
SLITRK1 |
q31.1 |
|
|
-0.03 |
0.33 |
rs9319013 |
13 |
83522913 |
MIR548F1 |
q31.1 |
|
|
-0.29 |
0.55 |
rs723576 |
13 |
95002092 |
CLDN10 |
q32.1 |
|
|
-0.11 |
0.47 |
rs1547166 |
13 |
95071328 |
DZIP1 |
q32.1 |
|
|
-0.37 |
0.46 |
rs7338545 |
13 |
95073552 |
DZIP1 |
q32.1 |
|
|
-0.16 |
0.39 |
rs8018440 |
14 |
32981820 |
NPAS3 |
q13.1 |
0.25 |
0.71 |
0.03 |
0.52 |
rs4903707 |
14 |
39909619 |
FBXO33 |
q21.1 |
0.57 |
0.78 |
0.38 |
0.73 |
rs9944120 |
14 |
40082198 |
FBXO33 |
q21.1 |
0.04 |
0.51 |
|
|
rs7149526 |
14 |
80098349 |
CEP128 |
q31.1 |
0.00 |
0.47 |
|
|
rs1951980 |
14 |
95322780 |
TCL1A |
q32.13 |
-1.47 |
1.00 |
-1.54 |
0.97 |
rs1345300 |
16 |
8671929 |
ABAT |
p13.2 |
-0.10 |
0.68 |
|
|
rs2283557 |
16 |
24273067 |
CACNG3 |
p12.1 |
-0.01 |
0.63 |
|
|
rs4784651 |
16 |
54869275 |
GO1 |
q13 |
0.15 |
0.42 |
|
|
rs9922112 |
16 |
54872188 |
GO1 |
q13 |
0.10 |
0.39 |
|
|
rs2587878 |
16 |
54872860 |
GO1 |
q13 |
-0.16 |
0.46 |
-0.02 |
0.48 |
rs8047093 |
16 |
59619195 |
CDH8 |
q21 |
0.09 |
0.64 |
|
|
rs8044561 |
16 |
70108642 |
CHST4 |
q22.3 |
0.18 |
0.28 |
|
|
rs310334 |
16 |
70131048 |
CHST40.11769305 |
q22.3 |
0.12 |
0.29 |
|
|
rs2432524 |
16 |
70141834 |
CHST4 |
q22.3 |
1.36 |
0.92 |
1.66 |
0.97 |
rs8056272 |
16 |
72267976 |
LOC100506172 |
q22.3 |
0.04 |
0.50 |
|
|
rs12928065 |
16 |
77094975 |
WWOX |
q23.1 |
-0.13 |
0.61 |
-0.02 |
0.52 |
rs933374 |
17 |
13742206 |
CDRT15P1 |
p12 |
0.04 |
0.69 |
0.16 |
0.65 |
rs9889937 |
17 |
18512091 |
FOXO3B |
p11.2 |
0.00 |
0.58 |
0.01 |
0.58 |
rs4792855 |
17 |
40815480 |
ARHGAP27 |
q21.31 |
-0.18 |
0.87 |
-0.48 |
0.87 |
rs17673185 |
17 |
48822712 |
MIR548AJ2 |
q22 |
-0.02 |
0.57 |
-0.12 |
0.55 |
rs7265169 |
20 |
312747 |
TRIB3 |
p13 |
0.09 |
0.63 |
|
|
rs459012 |
20 |
410008 |
CSNK2A1 |
p13 |
0.25 |
0.59 |
|
|
rs6053384 |
20 |
5354093 |
LINC00658 |
p12.3 |
0.83 |
0.82 |
0.75 |
0.80 |
rs1555669 |
20 |
12598312 |
SPTLC3 |
p12.1 |
0.01 |
0.41 |
|
|
rs6074541 |
20 |
12926517 |
SPTLC3 |
p12.1 |
-0.01 |
0.46 |
|
|
rs6081333 |
20 |
18660916 |
DTD1 |
p11.23 |
-0.38 |
0.72 |
-0.16 |
0.57 |
rs2067845 |
20 |
19446645 |
SLC24A3 |
p11.23 |
0.88 |
0.91 |
0.83 |
0.81 |
rs6035387 |
20 |
19524045 |
SLC24A3 |
p11.23 |
0.22 |
0.46 |
0.03 |
0.42 |
rs6515030 |
20 |
19529688 |
SLC24A3 |
p11.23 |
0.39 |
0.67 |
0.23 |
0.51 |
rs942990 |
20 |
19533661 |
SLC24A3 |
p11.23 |
0.07 |
0.32 |
|
|
rs199575 |
20 |
19902601 |
RIN2 |
p11.23 |
-0.11 |
0.73 |
|
|
rs56916 |
20 |
19936892 |
RIN2 |
p11.23 |
1.15 |
0.90 |
1.26 |
0.82 |
rs199572 |
20 |
19940313 |
RIN2 |
p11.23 |
0.17 |
0.42 |
|
|
rs200175 |
20 |
19949483 |
A20 |
p11.23 |
0.45 |
0.54 |
0.21 |
0.35 |
rs6050359 |
20 |
25070945 |
LOC284798 |
p11.21 |
0.33 |
0.50 |
0.10 |
0.41 |
rs6050372 |
20 |
25081225 |
LOC284798 |
p11.21 |
0.77 |
0.81 |
0.84 |
0.88 |
rs6050418 |
20 |
25118643 |
LOC284798 |
p11.21 |
0.48 |
0.62 |
0.36 |
0.63 |
rs3787076 |
20 |
25143018 |
ENTPD6 |
p11.21 |
0.37 |
0.68 |
0.07 |
0.57 |
rs2073077 |
20 |
25143913 |
ENTPD6 |
p11.21 |
0.13 |
0.54 |
|
|
rs6022419 |
20 |
36083479 |
TTI1 |
q11.23 |
-0.08 |
0.67 |
|
|
rs6030352 |
20 |
40658434 |
PTPRT |
q12 |
0.66 |
0.87 |
0.52 |
0.71 |
rs1010310 |
20 |
44268451 |
CDH22 |
q13.12 |
-0.02 |
0.48 |
|
|
rs846743 |
20 |
48768050 |
PARD6B |
q13.13 |
-0.13 |
0.59 |
|
|
rs6021702 |
20 |
50145309 |
ZFP64 |
q13.2 |
-0.13 |
0.64 |
|
|
rs7268780 |
20 |
56735571 |
STX16-NPEPL1 |
q13.32 |
0.03 |
0.65 |
|
|
rs2823209 |
21 |
15586648 |
NRIP1 |
q21.1 |
0.24 |
0.66 |
0.22 |
0.54 |
rs2823216 |
21 |
15591805 |
NRIP1 |
q21.1 |
0.34 |
0.74 |
0.30 |
0.60 |
rs463370 |
21 |
30177240 |
GRIK1 |
q21.3 |
1.40 |
0.95 |
1.51 |
1.00 |
|
aGene names that SNPs belong to or are closest to. |
Table 1: SNPs selected incorporating summary statistics from public available source by using pIGWAS and SNPs selected using scaled Lasso for GWAS with genotype. |