PATTERN OCC1 (#PRO / #TOT) OCC2 (#PRO / #TOT) FSCORE p-value
CNTNTGNA 53(19/20) 102(20/20) 3267.99 1.67E-03
TTCTNCT 45(18/20) 78(20/20) 3257.9 1.70E-03
CTTNNGNT 57(20/20) 96(20/20) 3102.72 2.41E-03
CAGNAGNA 37(17/20) 68(20/20) 2951.51 3.38E-03
CNAANNGC 59(20/20) 90(20/20) 2810.07 4.64E-03
CTNNNCAA 85(20/20) 125(20/20) 2784.7 4.91E-03
TNAGCNA 55(16/20) 104(20/20) 2772.61 5.04E-03
CTTNTG 84(19/20) 131(20/20) 2747.18 5.34E-03
GNAACNNA 56(20/20) 94(20/20) 2706.67 5.85E-03
TANCCA 59(18/20) 97(20/20) 2635.22 6.86E-03
TNGNNNAG 268(20/20) 340(20/20) 2623.85 7.04E-03
CNGNCTA 34(15/20) 70(20/20) 2605.81 7.33E-03
TNCNNCT 373(20/20) 465(20/20) 2564.07 8.04E-03
TNNGCNA 211(20/20) 292(20/20) 2525.51 8.77E-03
AGANGNA 102(20/20) 150(20/20) 2474.9 9.82E-03
CATTTG 21(12/20) 43(20/20) 2408.01 1.14E-02
CACNTT 88(20/20) 127(20/20) 2392.7 1.18E-02
GNNCTTNC 62(19/20) 100(20/20) 2370.31 1.24E-02
TNCNTNTG 80(20/20) 126(20/20) 2339.02 1.33E-02
TAGNNNGA 42(18/20) 70(20/20) 2333 1.35E-02
Note: 1. OCC: total number of patterns within the sequences of the corresponding cluster (OCC1 represents the downregulated DEG promoter sequence set; OCC2 represents the upregulated DEG promoter sequence set) 2. PRO: total number of sequences with the pattern in the corresponding cluster 3. TOT: total number of sequences in the corresponding cluster 4. FSCORE: result of the ANOVA between the two input clusters and the background sequence set)
Table 4:Sequence patterns over-represented in the upregulated genes, but under-represented in the downregulation genes.