Symbol Accession no. Gene category and name Classifier#
    Cell recognition        
HLA-DPB1 NM_002121 major histocompatibility complex, class II, DP beta 1 (HLA-DPB1) A      
HLA-DMB NM_002118 major histocompatibility complex, class II, DM beta (HLA-DMB) A B C  
GLG1 NM_012201 golgi apparatus protein 1 (GLG1), E-selectin ligand-1, MG-160, cysteine-rich  fibroblast growth factor receptor A   C D
    Complements        
C1S NM_001734 complement component 1, s subcomponent (C1S) A      
C1QG NM_172369 complement component 1, q subcomponent, gamma polypeptide (C1QG)       D
C1QA NM_015991 complement component 1, q subcomponent, alpha polypeptide (C1QA)        
    ECM remodeling        
PLAU NM_002658 plasminogen activator, urokinase (PLAU)     C D
MMP11 NM_005940 matrix metalloproteinase 11 (stromelysin 3) (MMP11)   B   D
MMP2 NM_004530 matrix metalloproteinase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase) (MMP2)       D
COL1A1 NM_000088 collagen, type I, alpha 1 (COL1A1)     C  
COL6A1 NM_001848 collagen, type VI, alpha 1 (COL6A1)       D
COL3A1 NM_000090 collagen, type III, alpha 1 (Ehlers-Danlos syndrome type IV, autosomal dominant) (COL3A1)        
LGALSI NM_002305 lectin, galactoside-binding, soluble, 1 (galectin 1) (LGALS1)     C D
    Cyto skeleton-associated        
TAGLN NM_003186 transgelin (TAGLN) A   C  
ACTN1 NM_001102 actinin, alpha 1 (ACTN1)   B    
CKM NM_001824 creatine kinase, muscle (CKM) A B    
MYL9 NM_006097 myosin, light polypeptide 9, regulatory (MYL9)   B    
FHL1 NM_001449 four and a half LIM domains 1 (FHL1)     C  
    Cytokines        
CCL19 NM_006274 chemokine (C-C motif) ligand 19 (CCL19)     C  
NK4 NM_004221 natural killer cell transcript 4 (NK4),interleukin 32 (IL32), transcript variant 2 A   C  
TNFSF10 NM_003810 tumor necrosis factor (ligand) superfamily, member 10 (TNFSF10) A B C  
    Others        
GRCC10 NM_138425 hypothetical protein BC009925 (LOC113246), (GRCC10) A      
AFG3L2 NM_006796 AFG3 ATPase family gene 3-like 2 (yeast) (AFG3L2), nuclear gene encoding mitochondrial protein   B C  
HIST1H2BK NM_080593 histone 1, H2bk (HIST1H2BK)       D
# A, classifyer for LDA-1; B, for LDA-2; C, for LDA-3; D, for LDA-4, respectively.
Table 3: Marker genes up-regulated in advanced OSCCs.