Effect Chromosome Odds Ratio Estimate Lower CL* Upper CL
PTP4A3 Loss vs. Normal 8q24.3 0.493 0.214 1.135
PTP4A3 Gain vs. Normal   12.158 3.461 42.71
LMO2 Loss vs. Normal 11p13 4.977 2.16 11.466
LMO2 Gain vs. Normal   0.573 0.205 1.607
FGF3 Loss vs. Normal 11q13 0.882 0.447 1.741
FGF3 Gain vs. Normal   7.819 3.286 18.604
CDKN2B Loss vs. Normal 9p21 3.256 1.676 6.325
CDKN2B Gain vs. Normal   1.168 0.442 3.087
BCL6 Loss vs. Normal 3q27 0.55 0.27 1.12
BCL6 Gain vs. Normal   8.989 3.155 25.612
*CL: Confidence Limit
Table 2: Genes with loss or gain that predict tumor (highlighted in bold).