Primers for qPCR (5' to 3') genes Acession Trire2 Forward Reverse cbh1 123989 CCGAGCTTGGTAGTTACTCTG GGTAGCCTTCTTGACTGAGT gluc83 121746 CAGCAAGCTCAACAACGTCAAGGT TCCATGAGGCAATGTTGGCGTTTC lip1 106405 GATTCCTTCGAAGGCTCCTTG ACGAAGTTGCGGATGTTCTTG ap1 71566 TCTTTGCCATCTTGCTGACC GAGAAGACGGGTGAGTATTGG nag1 21725 AATGGAGTGCCGATCATCAC TTGTGCTGAAGATGGACTGC chit42 80833 GGACATCACTCATGTCATCTACTC GACATCGTTCCAGGAATCATCC tef1 46958 CCACATTGCCTGCAAGTTCGC GTCGGTGAAAGCCTCAACGCAC

Table 1: List of genes selected for differential expression analysis under mycoparasitic conditions by qPCR. The primers pairs used were designed based on the sequences of T. reesei available in the JGI database (http://genome.jgi-psf.org/Trire2/Trire2.home.html).