| Strain |
Subtype |
Gene |
Forward Primer |
Reverse Primer |
Amplicon Length |
| PekingDuck/Singapore/645/97 |
H5N3 |
HA5 |
CAGATTTGCATTGGTTACCATGC |
GATTTCACRTATTTGGGGCATTC |
920 |
| |
|
NA3 |
AGCAAAAGCAGGTGCGAG3 |
CGATCCAGGTTCATTGTC |
1385 |
| Ck/PA/13609/93 |
H5N2 |
M |
AGCAAAAGCAGG1 |
GACGATCAAGAATCCACAATA |
849 |
| |
|
HA5 |
TCTGCATTGGTTATCATGC |
TATTGCTCCAAATAGGCCTC |
990 |
| |
|
NA2 |
ATGAATCCAAATCAGAAGATAATAAC |
CCATCAGGCCATGAGCCTG |
1310 |
| Ck/Puebla/8624-602/94 |
H5N2 |
HA5 |
AGCCAAAAGCAGGGGT3 |
AGTAGAAACAAGGGTG2 |
995 |
| |
|
NA2 |
ATGAATCCAAATCAGAAGATAATAAC |
CCATCAGGCCATGAGCCTG |
1323 |
| Tk/WI/68 |
H5N8 |
HA5 |
GGTTATCATGCAAACAATTC |
TATTGCTCCAAACAGACCTC |
982 |
| Ck/DE/HOBO/03 |
H7N2 |
M |
AGCAAAAGCAGG1 |
GACGATCAAGAATCCACAATA |
848 |
| Ck/NY/13142-5/94 |
H7N2 |
HA7 |
AGCCAAAAGCAGGGGA3 |
AGTAGAAACAAGGGTG2 |
1726 |
| Tk/OR/71 |
H7N3 |
HA7 |
AGCCAAAAGCAGGGGA3 |
AGTAGAAACAAGGGTG2 |
1726 |
| |
|
NA3 |
AGCAAAAGCAGGTGCGAG3 |
CGATCCAGGTTCATTGTC |
1383 |
| Ck/Korea/96006/96 |
H9N2 |
M |
AGCAAAAGCAGG1 |
GACGATCAAGAATCCACAATA |
849 |
| |
|
HA9 |
AGCCAAAAGCAGGGGA/T3 |
AGTAGAAACAAGGGTG2 |
1727 |
| |
|
NA2 |
ATGAATCCAAATCAGAAGATAATAAC |
CCATCAGGCCATGAGCCTG |
1382 |
1Uni3’ (AGCAAAAGCAGG), [10]
2Derivative of Uni5’ (AGTAGAAACAAG), [10]
3Extended derivative of Uni3’ |
