| Chromosome |
Position |
Reference |
Mutation |
Replicate
1 VF |
Coverage |
Replicate 2 VF |
Coverage |
Replicate 3 VF |
Coverage |
| Examples of Consistent Variant Calls |
| 1 |
43815071 |
T |
G |
0.1699 |
5126 |
0.1504 |
6973 |
0.1429 |
5075 |
| 1 |
43815081 |
G |
A |
0.0772 |
5003 |
0.065 |
6903 |
0.069 |
5017 |
| 1 |
43815149 |
A |
C |
0.1395 |
2151 |
0.0704 |
2927 |
0.0551 |
1977 |
| 1 |
115258743 |
A |
C |
0.0971 |
3843 |
0.1238 |
1761 |
0.0799 |
5331 |
| 1 |
115258746 |
A |
C |
0.0755 |
3922 |
0.0909 |
1286 |
0.0663 |
5418 |
| 2 |
212578396 |
T |
A |
0.2816 |
522 |
0.2754 |
552 |
0.2921 |
736 |
| 2 |
212578412 |
G |
T |
0.1073 |
522 |
0.125 |
552 |
0.0924 |
736 |
| Examples of Inconsistent Variant Calls for Replicate 1 |
| 3 |
10183861 |
C |
T |
0.3133 |
466 |
|
|
|
|
| 3 |
10191550 |
C |
T |
0.1421 |
739 |
|
|
|
|
| 3 |
41266050 |
C |
T |
0.1081 |
2913 |
|
|
|
|
| 3 |
178928035 |
C |
T |
0.13 |
1846 |
|
|
|
|
| 3 |
178951951 |
C |
T |
0.1149 |
3654 |
|
|
|
|
| 4 |
1806164 |
C |
T |
0.1203 |
1663 |
|
|
|
|
| 4 |
1807877 |
G |
T |
0.1173 |
1671 |
|
|
|
|
| Examples of Inconsistent Variant Calls for Replicate 2 |
| 3 |
10183871 |
G |
A |
|
|
0.145 |
607 |
|
|
| 3 |
10183893 |
C |
T |
|
|
0.3424 |
625 |
|
|
| 3 |
10191559 |
C |
T |
|
|
0.1485 |
1192 |
|
|
| 3 |
10191562 |
C |
T |
|
|
0.104 |
1192 |
|
|
| 4 |
1803621 |
C |
T |
|
|
0.1311 |
1556 |
|
|
| 4 |
1807873 |
C |
T |
|
|
0.1344 |
774 |
|
|
| 4 |
55144250 |
C |
T |
|
|
0.1311 |
2105 |
|
|
| Examples of Inconsistent Variant Calls for Replicate 3 |
| 3 |
10183890 |
C |
T |
|
|
|
|
0.2679 |
530 |
| 3 |
10191581 |
C |
T |
|
|
|
|
0.2537 |
816 |
| 3 |
178916899 |
C |
T |
|
|
|
|
0.1729 |
931 |
| 3 |
178916929 |
G |
T |
|
|
|
|
0.1697 |
931 |
| 4 |
1807876 |
C |
T |
|
|
|
|
0.1754 |
1283 |
| 4 |
1807893 |
C |
T |
|
|
|
|
0.2448 |
1307 |
| 4 |
153247288 |
C |
T |
|
|
|
|
0.1654 |
1475 |
|