| |
TP |
FP |
TN |
FN |
Sn (%) |
Sp (%) |
MCC (%) |
| SignalP |
199 |
364 |
7164 |
17 |
92.1 |
95.2 |
55.4 |
| Phobius |
188 |
638 |
6890 |
28 |
87.0 |
91.5 |
41.9 |
| TargetP |
198 |
442 |
7086 |
18 |
91.7 |
94.1 |
51.3 |
| WolfPsort |
108 |
70 |
7458 |
108 |
50.0 |
99.1 |
53.9 |
| SignalP/TMHMM |
197 |
237 |
7291 |
19 |
91.2 |
96.9 |
63.0 |
| Phobius/TMHMM |
188 |
636 |
6892 |
28 |
87.0 |
91.6 |
42.0 |
| TargetP/TMHMM |
195 |
256 |
7272 |
21 |
90.3 |
96.6 |
61.1 |
| WolfPsort/TMHMM |
106 |
45 |
7483 |
110 |
49.1 |
99.4 |
57.7 |
| SignalP/TMHMM/TargetP |
195 |
149 |
7379 |
21 |
90.3 |
98.0 |
70.6 |
| SignalP/TMHMM/TargetP/PS-Scan |
195 |
134 |
7394 |
21 |
90.3 |
98.2 |
72.3 |
| Phobius/TargetP/TMHMM |
183 |
122 |
7406 |
33 |
84.7 |
98.4 |
70.4 |
| SignalP/TMHMM/WolfPsort |
106 |
35 |
7493 |
110 |
49.1 |
99.5 |
59.9 |
| SignalP/TMHMM/Phobius |
188 |
183 |
7345 |
28 |
87.0 |
97.6 |
65.2 |
| SignalP/HMM/Phobius/TargetP |
183 |
113 |
7415 |
33 |
84.7 |
98.5 |
71.5 |
| SignalP/TMHMM/Phobius/TargetP/PS-Scan |
183 |
100 |
7428 |
33 |
84.7 |
98.7 |
73.2 |
| SignalP/TMHMM/Phobius/TargetP/WolfPsort/PS-Scan |
102 |
29 |
7499 |
114 |
47.2 |
99.6 |
59.8 |
|
TP : true positives; FP: false positives; TN: true negatives; FN: false negatives. Sn: sensitivity; Sp:specificity; MCC: Mathews’ correlation coefficient.
Table 3: Prediction accuracies of secreted proteins in plants. |
