| |
TP |
FP |
TN |
FN |
Sn (%) |
Sp (%) |
MCC (%) |
| SignalP |
30 |
154 |
1825 |
2 |
93.8 |
92.2 |
37.3 |
| Phobius |
30 |
118 |
1861 |
2 |
93.8 |
94.0 |
42.1 |
| TargetP |
31 |
259 |
1720 |
1 |
96.9 |
86.9 |
29.8 |
| WolfPsort |
28 |
118 |
1861 |
4 |
87.5 |
94.0 |
39.3 |
| SignalP/TMHMM |
29 |
98 |
1881 |
3 |
90.6 |
95.0 |
44.1 |
| Phobius/TMHMM |
30 |
113 |
1866 |
2 |
93.8 |
94.3 |
42.9 |
| TargetP/TMHMM |
30 |
143 |
1836 |
2 |
93.8 |
92.8 |
38.6 |
| WolfPsort/TMHMM |
27 |
99 |
1880 |
5 |
84.4 |
95.0 |
41.0 |
| SignalP/TMHMM/Phobius |
29 |
85 |
1894 |
3 |
90.6 |
95.7 |
46.7 |
| SignalP/TMHMM/Phobius/TargetP |
29 |
70 |
1909 |
3 |
90.6 |
96.5 |
50.4 |
| SignalP/TMHMM/Phobius/TargetP/WolfPsort |
26 |
48 |
1931 |
6 |
81.3 |
97.6 |
52.4 |
| SignalP/TMHMM/Phobius/TargetP/WolfPsort/PS-Scan |
26 |
47 |
1932 |
6 |
81.3 |
97.6 |
52.8 |
|
TP : true positives; FP: false positives; TN: true negatives; FN: false negatives. Sn: sensitivity; Sp:specificity; MCC: Mathews’ correlation coefficient.
Table 4: Prediction accuracies of secreted proteins in protists. |
