Allele

Rank

Sequence

Residue No.

Score

Predicted affinity

 

I-Ab

1

YKSSVPTTR

24

1.154

High

2

PTTRVVVHQ

29

1.056

Moderate

3

QHLYVVLYT

148

1.041

Moderate

4

ITQTQHLYV

144

1.000

Moderate

 

I-Ad

1

PISSWSAAF

89

0.575

Moderate

2

FIKLGAGIT

137

0.505

Moderate

3

GTKGRRTPR

9

0.504

Moderate

4

TSVALKAVL

156

0.464

Low

 

I-Ag7

1

NGVAGTDCT

123

1.433

High

2

GKVESNGVA

118

1.318

High

3

EIKPEGDVA

50

1.316

High

4

SWSAAFTSP

92

1.310

High

 

RT1.B

1

ITQTQHLYV

144

0.606

Moderate

2

AFTSPALLV

96

0.602

Moderate

3

TQTQHLYVV

145

0.590

Moderate

4

AAFTSPALL

95

0.586

Moderate

Table 9: Peptide binders of FBNVY coat protein to MHC-II molecules.