Allele

Rank

Sequence

Residue No.

Score

Predicted affinity

 

I-Ab

1

VALKVVLEH

158

1.237

High

2

PITRVVVHQ

29

0.822

Moderate

3

ISQTQHLYV

144

0.808

Moderate

4

QHLYVVMYT

148

0.772

Moderate

 

I-Ad

1

GAGISQTQH

141

0.578

Moderate

2

VALKVVLEH

158

0.497

Low

3

TSVALKVVL

156

0.466

Low

4

TAPALLVKE

98

0.421

Low

 

I-Ag7

1

SPIANWAAA

88

2.138

High

2

WAAAFTAPA

93

1.698

High

3

PIANWAAAF

89

1.642

High

4

NWAAAFTAP

92

1.439

High

 

RT1.B

1

AAAFTAPAL

94

1.010

Moderate

2

AFTAPALLV

96

0.716

Moderate

3

FTAPALLVK

97

0.636

Moderate

4

ANWAAAFTA

91

0.611

Moderate

Table 10: Peptide binders of MVDV coat protein to MHC-II molecules.