Allele

Rank

Sequence

Residue No.

Score

Predicted affinity

 

I-Ab

1

PSLMVKESV

97

0.990

Moderate

2

RYSMKKVML

56

0.785

Moderate

3

IAYKPPSSK

21

0.776

Moderate

4

DAMKITLET

155

0.755

Moderate

 

I-Ad

1

KLESSGTAG

116

0.579

Moderate

2

GGGKLESSG

113

0.571

Moderate

3

GSGISTQH

138

0.541

Moderate

4

APGELVNYL

71

0.447

Low

 

I-Ag7

1

SGTAGKDVT

120

1.631

High

2

SRIAYKPPS

19

1.379

High

3

SPIANWSSS

85

1.360

High

4

TLTMAPGEL

67

1.309

High

 

RT1.B

1

TLTMAPGEL

67

0.624

Moderate

2

AMKITLETR

156

0.426

Low

3

QTQHLYLII

143

0.392

Low

4

ATLTMAPGE

66

0.379

Low

Table 11: Peptide binders of SCSV coat protein to MHC-II molecules.