Allele

Rank

Sequence

Residue No.

Score

Predicted affinity

 

I-Ab

1

RKTTVLRKN

133

1.088

Moderate

2

IWKMFMLLV

59

0.857

Moderate

3

GSILVPENT

33

0.732

Moderate

4

PGLFIKPEH

97

0.630

Moderate

 

I-Ad

1

DYSSLGSIL

28

0.720

Moderate

2

LEAGVATGT

117

0.661

Moderate

3

TTCLEAPGL

91

0.528

Moderate

4

FIWKMFMLL

58

0.496

Low

 

I-Ag7

1

SINYQNRIT

159

1.496

High

2

YLYLAFYCS

147

1.360

High

3

TEVDYLYLA

143

1.321

High

4

SGELEAGVA

114

1.318

High

 

RT1.B

1

ATSHDYSSL

24

0.757

Moderate

2

INQPTTCLE

87

0.537

Moderate

3

TEVDYLYLA

143

0.485

Low

4

TTCLEAPGL

91

0.473

Low

*Optimal score for MHC peptide binder in mouse

Table 13: Peptide binders of BBTV coat protein to MHC-II molecules.