Table 2

Methods	ROC₁₀₀	ROC₂₀₀	ROC₃₀₀	ROC₃₅₀
logPr	0.153	0.251	0.324	0.354
RamRMSD	0.149	0.229	0.304	0.336
TM-RMSD	0.204	0.246	0.290	0.313
TM-score	0.193	0.241	0.277	0.293

Our logPr and RamRMSD showed worse performance for the clearer cases (protein pairs before 100^th false positives) but showed comparable accuracy for more difficult cases (protein pairs after 100^th false positives) as can be seen by high ROC₃₀₀ and ROC₃₅₀ values.

Table 2: ROC values of the Four Methods.