S.No Gene Symbol Protein Name Description Fold change
1 PCMT1 Protein-L-isoaspartate (D-aspartate) O-methyltransferase It is a protein repair enzyme involved in the conversion of abnormal D-aspartyl and L-isoaspartyl residues to the normal L-aspartyl form 20.7
2 FBXW7 F-box and WD repeat domain containing 7 It is one of the four subunits of SCF ubiquitin protein ligase complex and is involved in phosphorylation-dependent ubiquitination 18.7
3 S1PR1 Sphingosine-1-phosphate receptor 1 It plays a role in the differentiation of endothelial cells and cell-cell adhesion. 15.6
4 HSPA8 Heat shock 70kDa protein 8 It belongs to the HSP70 family and is implicated in protein folding. It is also regulates the transport of membrane components through the cell by acting as an ATPase. 13.9
5 USP3 Ubiquitin specific peptidase 3 It is a deubiquinating enzyme which deubiquinates H2A/H2B and is implicated in maintaining genome integrity. Knocking out this gene results in a delay in the S-phase progression of the cell cycle and accumulation of DNA breaks. 13.0
6 SCG3 Secretogranin III It belongs to a member of the chromogranin/secretogranin family of neuroendocrine secretory proteins. The function of this protein is unknown. However, some granins may play a role in protein sorting and proteolytic processing of prohormones. 12.2
7 CLK4 DC-like kinase 4 It is thought to regulate alternative splicing by interacting and phosphorylating serine and arginine rich proteins which are known to play an important role in the formation of spliceosomes. 12.5
8 RAB1A RAB1A, member RAS oncogene family It belongs to the Ras family of GTPases and is implicated in the regulation of vesicular traffic from the endoplasmic reticulum to the golgi apparatus. 11.0
9 SRP68 Signal recognition particle 68kDa It is a component of the signal recognition peptide complex, which transport secreted and membrane proteins to the endoplasmic reticulum for processing. 9.8
10 EIF4EBP2 Eukaryotic translation initiation factor 4E binding protein 2   It is a member of the eukaryotic translation initiation factor 4E binding protein family which can bind eIF4E and inhibit translation initiation. 8
Table 2: A partial list of downregulated genes in Tuberculous Meningitis co-infected with HIV.