Motif Width Best possible match
1 29 FYEPFWLIDFANMCIVVHLIGAYQVYCQP
2 21 ITAMIGSGVLSLPWAMKQLGW
3 21 YMPCACMGYWAFGDDTPDNIL
4 50 MSWVITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLWIVVPQQL
5 50 FNALGDVAFAYAGHNVVLEIQATIPSTPEKPSKKPMWKGVVVAYIVVAIC
6 21 FPFFNDVMGLFGSFSFWPTTY
7 29 QIVLSQIPNFHQIWWLSIVAAVMSFTYST
8 29 AIGNYAFCYSYHNVFPEIQDTMKKPPKEN
9 21 VNLYGCCIEYMITEGDNMKKI
10 21 CMLLFACVTYYTSTLLKDCYR
11 15 YFPCEMWIKQKKPKR
12 39 DSHQLFAILTALIVLPTVWLRDLSVLSYLSAGGVIASIL
13 28 LNLPQHKFWSKIAVWTTVINPFTKYALT
14 15 DPITGKRNYTYMDAV
15 29 FSLSWCTNWICIILGVLLMILSPIGGLRQ
16 41 STRWICLQMLSVVCLLVSVAAAAGSIQDVIDDLKVYKPFKT
17 15 RLIWRTAYVCFTTFV
18 50 CCATTVFIPSFHNYRIWSFLGLGMTTYTAWYLTIASIIHGQVEGVKHSGP
19 15 RPKRTGTVWTASAHI
20 21 KPKIKTYPDIGQAAFGRTGRI
Table 3: Twenty putative conserved motifs were identified in the maize and Arabidopsis AAAP proteins using the MEME search tool.