| Label |
Start / Stop |
Genes covered (total number of genes) |
Supporting information |
| GI_1 |
21,381-390,836 bp |
DIP0021 -> DIP0425
(404) |
This region contains two integrase genes annotated as phage integrase, five phage genes annotated as phage prohead protease, phage capsid protein, and phage tail fiber protein, ten tRNA genes and five transposon related genes encoding for IS element transposase. The overall IVOM score in this region is 18.19, significantly higher than that of in non-GI region (usually < 10). |
| GI_2 |
403,882 -421,292 bp |
DIP0441 -> DIP0452 (11) |
The IVOM score is 24.18, much higher than that of the rest of genomic region. This region contains one transposon related gene. This genomic island was supported by the genome analysis in [17], where researchers considered the gene region from DIP0438 to DIP0445 to be a pathogenicity island. |
| GI_3 |
460,848 -490,567 bp |
DIP0495 -> DIP0521 (26) |
The high IVOM score (17.98) in this region indicates sequence composition is different from that of its neighbor genomic regions. |
| GI_4 |
726,536 -799,536 bp |
DIP0750 -> DIP0826 (76) |
This predicted GI region contains one phage integrase gene, one tRNA gene, and six transposon related genes including transposase A and IS element transposase. IslandViewer also has one corresponding genomic island from DIP0806->DIP0822. Other research results also discovered two genomic islands, including DIP0752 -> DIP0766 and DIP0795 -> DIP0820, in this region |
| GI_5 |
929,413 -953,582 bp |
DIP0957 -> DIP0987 (30) |
The overall IVOM score in this region is 18.64. IslandViewer also predicted the genomic region from DIP0960 to DIP0966 to be a genomic island. |
| GI_6 |
1,136,731 -1,139,080 bp |
DIP01150 -> DIP1158 (9) |
The main evidence of predicted GI is due to its very high IVOM score (24.81) |
| GI_7 |
1,160,398 -1,699,168 bp |
DIP1168 -> DIP1662 (494) |
This region contains nine tRNA genes, and four putative transposase genes. IslandViewer predicted three GIs in this
region, i.e., DIP1184 -> DIP1188, DIP1444 -> DIP1453, and DIP1617 -> DIP1623. In a separate genome analysis, the region from DIP1645 to DIP1663 was considered as a pathogenicity island |
| GI_8 |
1,768,327 -1,781,812 bp |
DIP1728 -> DIP1738 (10) |
The IVOM score in this region is 18.08, and there are no highly expressed genes found in this region. |
| GI_9 |
1,861,303 -1,900,281 bp |
DIP1811 -> DIP1857 (46) |
This region contains one putative phage integrase, one putative phage terminase protein, and three tRNA genes. IslandViewer also predicted the genomic region from DIP1811 to DIP1841 to be a GI, and the region of DIP1817 -> DIP1837 was reported to a pathogenicity island in [17]. |
| GI_10 |
1,993,436 -2,020,291 bp |
DIP1941 -> DIP1971 (31) |
Four putative transposase genes, one Integrase gene and one tRNA gene are found in this predicted GI. The IVOM score in this region is 20.36. Islandviewer predicted two genomic Islands within this region, i.e., DIP1944 -> DIP1951, and DIP1960 -> DIP1964. |
| GI_11 |
2,043,495 -2,149,289 bp |
DIP1993 -> DIP2098 (105) |
This region contains three putative transposase genes including putative transposase for insertion element. The overall IVOM score is 20.18. IslandViewer predicted two GIs, DIP2015 -> DIP2022 and DIP2046 -> DIP2050. In another genome analysis study, two regions, DIP2010 -> DIP2015, and DIP2066 -> DIP2093, were considered to be pathogenicity islands. |
| GI_12 |
2,208,692 -2,237,426 bp |
DIP2142 -> DIP2163 (21) |
In this region, several GI related genes have been found, including putative bacteriophage holin protein, putative DNA-binding bacteriophage protein, and tRNA gene. In a separate genome study, researcher considered the region of DIP2148 -> DIP2168 to be a pathogenicity island. |
| GI_13 |
2,242,597 -2,275,566 bp |
DIP2169 -> DIP2191 (22) |
The IVOM score in this region is 15.42, which implies that this region contains different sequence composition from the rest of its host genome. |
| GI_14 |
2,284,782 -2,335,407 bp |
DIP2199 -> DIP2245 (46) |
The IVOM score in this region is 21.85. IslandViewer detected two genomic islands in this region, i.e., DIP2204 -> DIP2209, and 2) DIP2236 -> DIP2239. In addition, a separate genome analysis revealed that there was one pathogenicity island within this genomic region, which was from DIP2208 to DIP2234. |
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