Approach Advantages  Drawbacks
AQUA platform  -High sensititvity (fluorescence-based method) -Quality of antibodies 
  -Indicates the subcellular location of the protein  -Cost 
  -Accurate quantitative scoring   
Immunohistochemistry  -Low cost  -Quality and cross-reactivity of antibodies 
  -In situ analysis of specific proteins  -No reliable quantitative scores 
MALDI Imaging  -In situ imaging  -Technically painstaking  
  -Allows predicting the protein subcellular location  -High cost  
Protein microarrays  -In situ protein screening on a large scale  -Quality of antibodies 
Tissue Microarrays  -Screening of a wide of samples  -Poor pathological evaluation 
    -Difficult assembly of individual arrays 
2D-Electrophoresis -Detection of several proteins in a single run  -Restricted  capacity of  proten separation 
  -Allows identifying protein post-translational modifications   
Mass spectrometry  - Identification and quantitation of proteins  -Technical complexity 
  -Sensitivity and specificity  -Cost is not very acessible  
  -High throughput screening of samples   
ELISA -Analysis of large sample datasets  -Limit of detection 
  -Low-cost technology   
Western Blotting  -  Easy implementation  -Not always reprodutible 
Table 1: Advantages and drawbacks of the proteomic approaches available tooncoproteomics.