ID of proteins
Replicate
LC-MS run #1
LC-MS run #2
Run #1 and 2 common IDs
Unfractionated CSF
#1
131
125
113
#2
126
127
111
#3
125
124
109
IgY14
#1
95
83
74
#2
106
113
95
#3
117
113
101
SPE HLB
#1
158
159
137
#2
161
168
143
#3
165
162
144
Liposorb™
#1
65
69
53
#2
76
69
60
#3
65
65
54
Table 1:
Number of protein identifications (IDs) by LC-MS/MS. Protein IDs in each pre-fractionation scheme were obtained with Proteome Discoverer and a Mascot significance threshold p<0.01, with a minimum of one peptide per protein.
