The data set RMSE ABS Fold 1 of the training data 0.0868 0.0606 Fold 2 of the training data 0.0923 0.0674 Fold 3 of the training data 0.0821 0.0631 Fold 4 of the training data 0.0771 0.0557 Fold 5 of the training data 0.0783 0.0566 Test data 0.0978 0.0734

Table 1: The RMSE and ABS of the pairwise sequence alignment based SVM with the best parameter set on each fold of the raining data as well as the testing data set.