Peptide

Energy (kcal/mol)

Hydrogen   bonds

Site of amino  acid

      Score     Alleles
 IVRQRVIPV       -31.45            2        34-42        50.00  DRB1_1301      
FLLMLCLHH       -26.85            2        72-80        80.85  DRB1_0405           
FRLMRTNFL       -29.04            2      200-208        65.17  DRB1_1321              
Table 2: The conformational properties of the peptides with efficient binding energy and present on the variable regions of predicted peptide as investigated by molecular dynamics simulation using Autodock tool v3.0.