QC method None 50-bp trimmed at both ends QV-Based spike-in trained SVR
# of CCS reads selected all 9812 all 9812 top3000 top5000 top 3000 top5000
90% percentile of read accuracy 99.44% 99.48% 99.62% 99.56% 99.62% 99.56%
50% percentile of read accuracy 97.48% 97.63% 99.12% 98.61% 99.12% 98.67%
10% percentile of read accuracy 92.98% 93.06% 98.44% 94.56% 98.54% 95.09%
De Novo Assembly: # of Contigs 13(3FP*) 10* (0FP) 11(1FP) 12 (2FP) 10(0FP) 10(0FP)
Table 1: A Comparison of read accuracy (ABIP) improvements across three quality control (QC) strategies and their impacts on the De Novo assembly results.