Gene Primer pair sequence Annealing temperature(cycle) Product size
IFN-γ
MF: 5'- AAGAGTTAATATTTTATTAGGGCGA-3' 52°C (35) 151 bp
MR: 5'-TAAACTCCTTAAATCCTTTAACGAT-3'
UF: 5'-TGAAGAGTTAATATTTTATTAGGGTGA -3' 52°C (35) 154 bp
UR: 5'-TAAACTCCTTAAATCCTTTAACAAT -3'
SOCS1
MF: 5'-TTGTTCGGAGGTCGGATTT-3' 65°C (35) 218 bp
MR: 5'-ACTAAAACGCTACGAAACCG-3'
UF: 5'-TTTTTTGGTGTTGTTTGGAGGTTGGATTTT-3' 60°C (35) 243 bp
UR:5'-AAAACAAAACAATAAACTAAAACACTACAAAA CCA-3'
SOCS3
MF: 5'-GGAGATTTTAGGTTTTCGGAATATTTC -3' 60°C (30) 142 bp
MR: 5'- CCCCCGAAACTACCTAAACGCCG -3'
UF: 5'-GTTGGAGATTTTAGGTTTTTGGAATATTTT-3' 60°C (30) 151 bp
UR: 5'-AAACCCCCAAAACTACCTAAACACCA -3'
M: Methylated; U: Unmethylated; F: Forward; R: Reverse.
Table 1: Primer sequences for MSP analysis of IFN-γ, SOCS1 and SOCS3 promoter regions.