| Tool |
Description |
References |
| BLAST |
It is a search tool, used for DNA or protein sequence search based on identity. |
[109] |
|
HMMER |
Homologous protein sequences may be searched from the respective databases using this tool. |
[110] |
|
Clustal Omega |
Multiple sequence alignments may be performed using this program. |
[111] |
|
Sequerome |
Used for sequence profiling. |
[112] |
|
ProtParam |
Used to predict the physico-chemical properties of proteins. |
[113] |
|
JIGSAW |
To find genes, and to predict the splicing sites in the selected DNA sequences. |
[114] |
|
novoSNP |
Used to find the single nucleotide variation in the DNA sequence. |
[115] |
|
ORF Finder |
The putative genes may be subjected to this tool to find Open Reading Frame (ORF). |
http://www.ncbi.nlm. nih.gov/projects/gorf/ |
|
PPP |
Prokaryotic promoter prediction tool used to predict the promoter sequences present up-stream the gene |
http://bioinformatics. biol.rug.nl/websoftware/ppp/ppp_start.php |
|
Virtual Foorprint |
Whole prokaryotic genome (with one regular pattern) may be analysed using this program along with promoter regions with several regulator patterns. |
[116] |
|
WebGeSTer |
This is a database containing sequences of transcription terminator sequences and is used to predict the termination sites of the genes during transcription. |
[117] |
|
Genscan |
Used to predict the exon-intron sites in genomic sequences. |
[118] |
|
Softberry Tools |
Several tools are specialized in annotation of animal, plant, and bacterial genomes along with the structure and function prediction of RNA and proteins. |
www.softberry.com |
