Description Reference
MEGA (Molecular Evolutionary Genetics Analysis) Builds phylogenetic tress to study the evolutionary closeness. [119]
MOLPHY It is molecular phylogenetic analysis tool based on maximum likelihood method. [120]
PAML A phylogenetic analysis tool based on maximum likelihood. [121]
PHYLIP A package for phylogenetic studies. [122]
JStree An open-source library for viewing and editing phylogenetic trees for presentation improvement. [123]
TreeView Software to view the phylogenetic trees, with the provision of changing view. [124]
Jalview It is an alignment editor and is used to refine the alignment [125]
Table 2: Some popular tools used for phylogenetic analyses.