Tool

Description

References

CATH

A semi-automatic tool for the categorized organization of proteins.

[138]
RaptorX

It facilitates the user to predict protein structure based on either a single- or multi-template threading.

[139]
JPRED

Used to predict secondary structures of proteins.

[140]
PHD

Used to predict neural network structure.

[141]
HMMSTR

A hidden Markov model for the prediction of sequence-structure correlations in proteins.

[142]
APSSP2

Predicts the secondary structure of proteins.

[143]
MODELLER

Predicts 3D structure of protein based on comparative modelling

[70]
Phyre and Phyre2

Web-based servers for protein structure prediction

[144]
Table 4: Selected tools used to perform structure-function analyses of proteins.