S.No Genus: Flavivirus Accession Number GS*(bp) GC**(%) SSRa cSSRa RAb RDc cRAb cRDc cSSR%d F1 Apoi virus NC_003676.1 10116 48.3 42 3 4.15 23.03 0.30 4.05 7.14 F2 Banzi virus DQ859056 10182 50.4 34 1 3.34 21.70 0.10 1.18 2.94 F3 Bouboui virus DQ859057 10173 48.2 42 1 4.13 26.54 0.10 1.08 2.38 F4 Dengue virus AF326827 10618 47 53 4 4.99 30.80 0.38 5.46 7.55 F5 Edge Hill virus DQ859060 10206 47 39 5 3.82 24.99 0.49 8.72 12.82 F6 Japanese encephalitis virus AF221499 10976 51.3 36 2 3.28 20.68 0.18 4.83 5.56 F7 Jugra virus DQ859066 10173 48.2 39 1 3.83 24.38 0.10 1.57 2.56 F8 Kedougou virus DQ859061 10227 53 44 4 4.30 29.53 0.39 5.87 9.09 F9 Kyasanur Forest disease virus HM055369 10774 55.1 52 1 4.83 31.19 0.09 1.02 1.92 F10 Langat virus AF253420 10943 54.3 55 0 5.03 32.99 0.00 0.00 0.00 F11 Louping ill virus NC_001809 10871 54.8 65 3 5.98 37.72 0.28 4.14 4.62 F12 Modoc virus AJ242984 10600 45.5 27 0 2.55 17.26 0.00 0.00 0.00 F13 Montana myotisleukoencephalitis virus AJ299445 10690 44.1 48 0 4.49 27.60 0.00 0.00 0.00 F14 Murray Valley encephalitis virus KF751871 10953 48.9 40 2 3.65 23.01 0.18 4.29 5.00 F15 Powassan virus NC_003687 10839 53.3 57 1 5.26 34.41 0.09 1.57 1.75 F16 Rio Bravo virus JQ582840 10742 43.4 42 0 3.91 24.30 0.00 0.00 0.00 F17 Saboya virus DQ859062 10173 47.7 40 2 3.93 24.77 0.20 2.26 5.00 F18 Sepik virus DQ859063 10218 47.2 36 3 3.52 24.08 0.29 4.60 8.33 F19 St. Louis encephalitis virus KM267635.1 10892 49.78 37 1 3.40 23.60 0.09 1.01 2.70 F20 Tembusu virus KR061333.1 10278 48.97 34 3 3.31 22.57 0.29 5.25 8.82 F21 Tick-borne encephalitis virus NC_001672 11141 53.8 67 3 6.01 42.10 0.27 3.59 4.48 F22 Uganda S virus DQ859065 10182 46.9 37 2 3.63 23.87 0.20 3.04 5.41 F23 Usutu virus AY453411 11066 51 37 3 3.34 22.77 0.27 3.98 8.11 F24 Wesselsbron virus JN226796 10814 47.7 39 0 3.61 23.58 0.00 0.00 0.00 F25 West Nile virus NC_009942.1 11029 51.15 37 4 3.35 22.85 0.36 5.08 10.81 F26 Yellow fever virus KM388815 10236 50.1 40 1 3.91 25.60 0.10 1.86 2.50 F27 Zika virus DQ859059 10254 50.8 45 3 4.39 29.06 0.29 3.51 6.67

aNumber of simple/compound microsatellites; bRelative abundance: number of simple/compound microsatellites present per kb of the genome (kb); cRelative density is defined as the total length (bp) contributed by each simple/compound microsatellite per kb of sequence analyzed; dcSSRs-% is the percentage of individual microsatellites being part of a compound microsatellite; *GS(bp); Genome Size ; **GC(%) Guanine and Cytosine in percentage

Table 1: Overview of simple and compound microsatellites in genus Flavivirus genome including dengue Virus.