RANK

POS.

N

SEQUENCE

C

MW (Da)

SCORE

% OPT.

8mer_H2_Db

439

AGK

PQLTPVAI

QAG

820.0

15.001

28.58 %

8mer_H2_Db

24

ILF

SKTTCPYC

KKV

884.03

14.29

27.22 %

8mer_H2_Db

224

VTY

LNAKGRLI

SPH

866.07

13.696

26.09 %

8mer_H2_Db

8

DGT

SQWLRKTV

DSA

976.17

13.263

25.27 %

8mer_H2_Db

246

QKV

STITGNKI

ILA

814.92

11.607

22.11 %

8mer_H2_Db

75

VPQ

MFVRGKFI

GDS

979.25

11.583

22.07 %

8mer_H2_Db

241

ITD

KNQKVSTI

TGN

899.04

11.41

21.74 %

8mer_H2_Db

283

FSL

PYFPGKTL

VIG

904.08

11.377

21.67 %

8mer_H2_Db

52

ELD

QLSNGSAI

QKC

770.84

11.253

21.44 %

8mer_H2_Db

398

PQL

SKVLCETV

GVK

860.03

9.948

18.95 %

9mer_H2_Db

189

DRS

KISHNWSTM

VEG

1062.23

25.291

50.22 %

9mer_H2_Db

152

GLG

GTCVNVGCI

PKK

847.0

16.502

32.76 %

9mer_H2_Db

527

LVC

RKSDNMRVL

GLH

1100.3

13.709

27.22 %

9mer_H2_Db

539

GLH

VLGPNAGEI

TQG

850.97

12.87

25.55 %

9mer_H2_Db

500

DIE

VYHSNFKPL

EWT

1086.26

11.747

23.32 %

9mer_H2_Db

328

DQQ

MAEKVGDYM

ENH

1025.2

11.231

22.30 %

9mer_H2_Db

524

YMK

LVCRKSDNM

RVL

1047.25

10.643

21.13 %

9mer_H2_Db

514

TVA

HREDNVCYM

KLV

1148.28

10.591

21.03 %

9mer_H2_Db

444

LTP

VAIQAGRYL

ARR

972.16

10.381

20.61 %

9mer_H2_Db

272

AVE

YGITSDDLF

SLP

1012.09

9.69

19.24 %

10mer_H2_Db

464

TEL

TDYSNVATTV

FTP

1052.09

23.99

40.76 %

10mer_H2_Db

503

VYH

SNFKPLEWTV

AHR

1179.37

19.929

33.86 %

10mer_H2_Db

98

DEL

AGIVNESKYD

YDL

1077.16

15.442

26.24 %

10mer_H2_Db

568

DRT

IGIHPTCSET

FTT

1039.17

14.934

25.37 %

10mer_H2_Db

215

YKV

ALRDNQVTYL

NAK

1174.32

14.69

24.96 %

10mer_H2_Db

587

TKK

SGVSPIVSGC

UG

887.02

13.676

23.24 %

10mer_H2_Db

257

ILA

TGERPKYPEI

PGA

1171.33

13.328

22.64 %

10mer_H2_Db

423

DEQ

TTVSNVYAIG

DIN

1006.11

12.481

21.21 %

11mer_H2_Db

338

YME

NHGVKFAKLCV

PDE

1197.45

21.22

26.69 %

11mer_H2_Db

98

DEL

AGIVNESKYDY

DLI

1240.34

20.391

25.65 %

11mer_H2_Db

527

LVC

RKSDNMRVLGL

HVL

1270.51

13.574

17.08 %

11mer_H2_Db

205

QSH

IGSLNWGYKVA

LRD

1166.37

13.026

16.39 %

11mer_H2_Db

423

DEQ

TTVSNVYAIGD

INA

1121.2

12.765

16.06 %

11mer_H2_Db

474

TTV

FTPLEYGACGL

SEE

1152.34

11.753

14.78 %

11mer_H2_Db

358

LKV

VDTENNKPGLL

LVK

1181.3

10.68

13.43 %

Table 1: PSSM based prediction of MHC ligands, from whose C-terminal end are proteosomal cleavage sites.