S. No Name of protein        accession N  S R:S ratio
1. ribulose-1,5-bisphosphate    
carboxylase large subunit (RuBisCO)
gi|349144  163 54   3
2. malate dehydrogenase gi|52139816 45 42 1
    gi|77999077 16 27 0.7
    gi|52139820 8 14 0.6
    gi|56562183  5 12 0.4
3. mitochondrial ATP synthase subunit beta gi|114421 57 34 1.7
4. ATP synthase beta subunit (53 kDa) gi|21633353 15 61 0.25
5. phosphoglycerate kinase precursor gi|3328122 47 28 1.7
6. chaperonin-60 beta subunit gi|1762130 49 11 4.5
7. glucan endo-1,3-beta-D- glucosidase gi|498926 36 20 1.8
8. RuBisCO activase gi|10720247 36 26 1.4
9. dehydroascorbate reductase gi|66475036 33 19 1.7
10.  inhibitor of yeast proteinase A gi|8648959        0 47
11.        
glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic     gi|120661       27 15 2.8
12.      chlorophyll a-b binding protein gi|115802         52 94   0.56
13.     glycine-rich RNA-binding protein    gi|45533923     23 14   1.6
14.       elongation factor 1-alpha         gi|119150         28 11  2.5
15.       
 
wound-induced proteinase inhibitor II         gi|125053          0 36
16.         mRNA binding protein precursor      gi|26453355       8 23 0.35
17.     RuBisCO small subunit 1         gi|132079          18 14 1.3
18.   
photosystem II CP47 chlorophyll apoprotein     gi|114107158     8 21 0.38
19.      enolase gi|119354           21 10 2.1
20. arginase 2 gi|54648782        4 25 0.16
21.     photosystem I P700    gi|225198    9 16 0.56
22. photosystem II protein D2 gi|164597815         4   20 0.2
23.         P14a gi|157830592        0   24
24.          basic chitinase gi|544011    3 17 0.18
25. leucine aminopeptidase          gi|1236654   6   17 0.35
26.        HSP68 gi|300265   14 6 2.3
27.    acidic endochitinase    gi|544010      5 15 0.3
28.       histone H4        gi|462243    13   1.9
29.    polyphenol oxidase precursor        gi|1172583    0 17 
30.    cytochrome b6           gi|114329999           4 13 0.3
31.       S-adenosyl-l-homocysteine hydrolase   gi|21362943 13 4 3.3
32.    glyceraldehyde 3-phosphate dehydrogenase gi|2078298   12 4 3
    gi|15217555      
15 0
    gi|256862074           14 0     
33.       phosphoglycerate mutase gi|4582924        12 3
34.          chlorophyll a-b binding protein 3C
gi|115825       0 75
35.   subtilisin-like protease (P69B)      gi|2230959     2 13 0.15
36.           non-specific lipid transfer protein gi|71360928   15    0  
37      plastid-lipid-Associated Protein    gi|2632090       2     0
38.    putative ascorbate peroxidase       gi|11387206     10 0.2
39.    Chlorophyll a-b binding protein CP24
gi|115833        8 5 1.6
40.           chlorophyll a/b-binding protein CAB      gi|170388         11 0.2
41.         aspartate aminotransferase gi|15236129 11 2 5.5
42.           photosystem II oxygen-evolving complex protein 3 gi|51457944 9 4 2.25
43.      Hsp90-1 gi|38154489 13 0
44. thaumatin-like protein (PR) gi|146737976 2 10 0.2
45.         putative photosystem I subunit III precursor gi|30013659 2 12 0.2
46.      adenine phosphoribosyltransferase gi|82621166 8 4 2
47.          alpha-mannosidase gi|301176645 4 8 0.5
48.  dihydrolipoamide dehydrogenase precursor gi|23321340 9 2 4.5
49.     chain L Photosystem I Supercomplex gi|149242538 2 8 0.25
50 endochitinase gi|116349 0 14
51.      actin gi|110612122 6 2 3
52. thioredoxin peroxidase gi|21912927 2 6 0.3
53.           ferredoxin--nitrite reductase  gi|19893 0 8
54. enoyl-ACP reductase gi|2204236 8 0
55.     Os06 putative FtsH gi|115469444 7 0
56.  deoxyuridine triphosphatase gi|416922           0
57.    ascorbate free radical reductase gi|50400860 0 7
58.        F1-ATPase alpha subunit gi|57115599 8 0
59      photosystem I reaction center II gi|131166 26 41 0.6
60.     photosystem II cytochrome b559 alpha subunit protein gi|11497544 5 0
61.   aminomethyltransferase gi|1707878 5 0
62.          enoyl-ACP reductase gi|2204236 8 0
63.  deoxyuridine triphosphatase gi|416922 7 0
64.  fructokinase 3 gi|38604456 4 0
65.     subtilisin-like protease          gi|2230959 2 13 0.15
66.    pectinesterase gi|1944575 0 6
67.         superoxide dismutase gi|33413303 0 5
68.  superoxide dismutase chloroplastic gi|134682 0 4
Table 1: The relative amounts of proteins, analyzed in infected R and S tomatoes at 28 dpi.