hCBS SSVS BLA BRR TP FP TP FP TP95  FP95 TP90 FP90 TP95  FP95  TP90  FP90 1 8 2 10 0 7 1 10 10 10 38 10 56 5 8 2 9 0 1 0 4 0 3 4 7 16 20 7 3 7 0 0 0 1 0 0 0 1 0 50 5 2 4 0 0 0 0 0 0 0 0 0

Table 2: True and false positive detections by all methods when applied to the real cattle LD data (4697 SNPs from chromosome 1 and 2) with 10 SNPs inside LDBlocks used to generate the phenotype. Four different values for the error variance were simulated.