hCBS SSVS BLA BRR
TP FP TP FP TP95  FP95 TP90 FP90 TP95  FP95  TP90  FP90
1 19 2 19 1 15 3 19 5 19 31 20 57
5 18 6 17 2 10 0 11 2 11 8 15 22
20 15 4 14 3 3 0 4 0 2 0 3 0
50 14 4 14 3 0 0 1 0 0 0 0 0
Table 3: True and false positive detections by all methods when applied to the real cattle LD data (4697 SNPs from chromosome 1 and 2) with 20 SNPs associated to the phenotype, 10 inside of LD-blocks and 10 correlated SNPs outside of LDblocks. Four different values for the error variancewere simulated.