| MOTIVATING MODEL |
ANALYSIS GOAL |
| Large change |
Reliably measured change |
| Independence/Normality of Genes |
Difference in Expression (F) |
T–statistic (T) |
| Exchangeability of Genes |
Significance Analysis of Microarray (SAM) |
| Complete Conjugacy |
Signal (CC.F) |
Standardized Signal (CC.T) |
| Tail probability (CC.TP) |
Bayes factor (CC.BF) |
| Independence of Abundance and Noise |
Signal (CI.F) |
Standardized Signal (CI.T) |
| Tail probability (CI.TP) |
Bayes factor (CI.BF) |
| Independence of Signal and Noise |
Signal (IC.F) |
Standardized Signal (IC.T) |
| Tail probability (IC.TP) |
Bayes factor (IC.BF) |
| Independence |
Signal (II.F) |
Standardized Signal (II.T) |
| Tail probability (II.TP) |
Bayes factor (II.BF) |
