MOTIVATING MODEL ANALYSIS GOAL
Large change Reliably measured change
Independence/Normality of Genes Difference in Expression (F) T–statistic (T)
Exchangeability of Genes Significance Analysis of Microarray (SAM)
Complete Conjugacy Signal (CC.F) Standardized Signal (CC.T)
Tail probability (CC.TP) Bayes factor (CC.BF)
Independence of Abundance and Noise Signal (CI.F) Standardized Signal (CI.T)
Tail probability (CI.TP) Bayes factor (CI.BF)
Independence of Signal and Noise Signal (IC.F) Standardized Signal (IC.T)
Tail probability (IC.TP) Bayes factor (IC.BF)
Independence Signal (II.F) Standardized Signal (II.T)
Tail probability (II.TP) Bayes factor (II.BF)
Table 2: Summary of statistics examined, by goal and motivating model structure.