MHC-II Allele POS. N SEQUENCE C MW (Da) SCORE % OPT.
MHC-II I_Ab 179 FSE FPDYPSIKA ALD 1019.18 13.645 38.29 %
MHC-II I_Ab 146 LAD MKGANIGVA QAA 842.01 11.916 33.44 %
MHC-II I_Ab 85 KIK LVAVNAKTR GPL 953.14 11.351 31.86 %
MHC-II I_Ab 19 GAC VAFSNANAA EGK 845.91 11.064 31.05 %
MHC-II I_Ab 18 LGA CVAFSNANA AEG 877.97 10.604 29.76 %
MHC-II I_Ab 121 IYN FSEPYYQDA IGL 1101.16 9.738 27.33 %
MHC-II I_Ab 21 CVA FSNANAAEG KLE 861.87 9.738 27.33 %
MHC-II I_Ab 179 FSE FPDYPSIKA ALD 1019.18 13.645 38.29 %
Table 2a: Prediction of MHCII ligands all rows highlighted in red represent predicted binders to the MHC-II Allele i.e. MHC-II I_Ab.