MHC-II Allele POS. N SEQUENCE C MW (Da) SCORE % OPT.
MHC-II I_Ag7 186 PSI KAALDAKRV DAF 953.15 14.202 34.75 %
MHC-II I_Ag7 230 VTK KDDPAFAKY VDD 1036.16 14.11 34.52 %
MHC-II I_Ag7 237 AFA KYVDDFVKE HKN 1124.26 14.021 34.30 %
MHC-II I_Ag7 162 TKK AIGEAAKKI GID 882.07 13.775 33.70 %
MHC-II I_Ag7 92 NAK TRGPLLDNG SVD 924.02 13.075 31.99 %
MHC-II I_Ag7 39 SKG QLIVGVKND VPH 967.12 10.196 24.95 %
MHC-II I_Ag7 248 EHK NEIDALAKK WGL 983.13 10.021 24.52 %
MHC-II I_Ag7 184 DYP SIKAALDAK RVD 898.07 9.809 24.00 %
MHC-II I_Ag7 85 KIK LVAVNAKTR GPL 953.14 9.195 22.50 %
MHC-II I_Ag7 192 LDA KRVDAFSVD KSI 1018.14 8.875 21.71 %
Table 2c: Prediction of MHCII ligands all rows highlighted in red represent predicted binders to the MHC-II Allele i.e. MHC-II I_Ag7.