| ApoF: |
LD group 1: ss142463324* |
| |
LD group 2: rs34934555* |
| LIPC: |
LD group 1: rs1077835, rs1077834, rs1800588*, rs2070895 |
| |
LD group 2: rs6082*, rs3829462, rs3829461* |
| |
LD group 3: rs6083, rs6084*, rs6074* |
| |
LD group 4: rs6078* |
| |
LD group 5: rs36041167* |
| |
LD group 6: rs35588604* |
| |
LD group 7: rs6082*, ss142463322* |
| |
LD group 8: rs690* |
| |
LD group 9: rs35511894* |
| LPL: |
LD group 1: rs248*, rs316*, rs4922115 |
| |
LD group 2: ss142463328*, rs1800590*, rs1801177 |
| |
LD group 3: ss142463330, ss142463332* |
| |
LD group 4: rs11570897*, rs11570891* |
| SCARB1: |
LD group 1: rs5889*, rs5888* |
| |
LD group 2: rs61932577*, rs5888* |
| |
LD group 3: rs5891*, rs5888* |
| |
LD group 4: rs4238001* |
| |
There were 5 SNPs in SCARB1 with low MAF that were excluded as not helpful: ss142463311, ss142463314, ss142463316, ss142463318, ss142463320 |
| LCAT: |
LD group 1: rs4986970* |
| |
LD group 2: ss142463326* |
| |
LD group 3: rs5923* |
| CETP: |
LD group 1: rs289715*, rs289718, rs289719*, rs1800774*, rs5882, rs289741, rs289742, rs289743, rs289744 |
| |
LD group 2: rs1800775, rs708272*, rs1532625, rs11076175*, rs158477, rs291044*, rs1800774* |
| |
LD group 3: rs1800776*, rs11076175*, rs11076176, rs289714, rs158477, rs291044*, rs1800774* |
| |
LD group 4: rs5880*, rs1800777 |
| |
LD group 5: rs158477, rs289715*, rs12720889, rs1801706*, rs289742 |
| |
LD group 6: rs1800776*, rs289745 |
| |
LD group 7: rs5883*, rs12720917 |
*tagging SNP |
