Pair |
Gene |
Primer |
Orientation |
Primer sequence (5'-3') |
Distance* |
A |
S2 |
RPS2exCF |
forward |
CCHGTNCCCAAGAAGCTGCT |
70 |
|
S2 |
RPS2exDR |
reverse |
GGTYTCCTTCCASAGRTCAG |
43 |
B |
S3 |
RPS3ex1F |
forward |
AAATCTCVAAGAAGAGRAAG |
2 |
|
S3 |
RPS3ex2R |
reverse |
ACRCCGGAGTANCCATCCTC |
62 |
C |
S3 |
RPS3ex2F |
forward |
GAGGATGGNTACTCCGGYGT |
53 |
|
S3 |
RPS3ex3R |
reverse |
CKCTTCTGVACMACAGCGGT |
48 |
D |
S3 |
RPS3ex3F |
forward |
ACCGCTGTKGTBCAGAAGMG |
30 |
|
S3 |
RPS3ex4R |
reverse |
GTCGCAACCTTCTCAGCRTA |
24 |
E |
S3 |
RPS3ex4F |
forward |
TAYGCTGAGAAGGTTGCGAC |
74 |
|
S3 |
RPS3ex5R |
reverse |
AASCKCAGRACACCATARCA |
6 |
F |
S14 |
RPS14exAF |
forward |
GCCTCMTTYAACGAYACCTT |
29 |
|
S14 |
RPS14exBR |
reverse |
CKGTCRGCCTTYACCTTCAT |
30 |
G |
S17 |
RPS17exBF |
forward |
AGWGGMATCTCCATCAARCT |
49 |
|
S17 |
RPS17exCR |
reverse |
GGRTCRACCTCGATGATSTC |
18 |
H |
S23 |
RPS23exAF |
forward |
TCACACGCCAARGGCATYGT |
15 |
|
S23 |
RPS23exBR |
reverse |
ATRGCAGAGTTRGGCTGCTT |
14 |
I |
S23 |
RPS23exBF |
forward |
AAGAACGGCAARAAGATCAC |
42 |
|
S23 |
RPS23exCR |
reverse |
TGACCYTTACGWCCRAATCC |
26 |
J |
S27 |
RPS27exAF |
forward |
GCTAARATYCARGAYAAGGA |
4 |
|
S27 |
RPS27exBR |
reverse |
GTGCGKCCRTCYTCCAGCTG |
43 |
K |
L3 |
RPL3exAF |
forward |
GGCTACAAGGCYGGYATGAC |
39 |
|
L3 |
RPL3exBR |
reverse |
CAGTTYTTGTAGAAKCGACG |
149 |
L |
L3 |
RPL3exBF |
forward |
GCGTCGMTTCTACAARAACT |
2 |
|
L3 |
RPL3exCR |
reverse |
GTGAARGCCTTCTTCTYGGA |
9 |
M |
L3 |
RPL3exDF |
forward |
CAAGGGWCACGGRTDCAAGG |
2 |
|
L3 |
RPL3exER |
reverse |
GTCTTRCGGGGMAGCTTCTT |
25 |
N |
L8 |
RPL8exBF |
forward |
AGTTCATCTACTGCGGCAAG |
37 |
|
L8 |
RPL8exCR |
reverse |
ATGAYGGTDCCYTCAGGCAT |
5 |
O |
L9 |
RPL9exCF |
forward |
RAACTTCYTGGGRGAGAAGT |
110 |
|
L9 |
RPL9exDR |
reverse |
ACDGTGGTGGCYTGCTGGAT |
10 |
P |
L11 |
RPL11exAF |
forward |
CARACGCCHGTCTTCTCCAA |
5 |
|
L11 |
RPL11exBR |
reverse |
AAGGATCKYACAGTGTAGCG |
4 |
Q |
L11 |
RPL11exBF |
forward |
CGCTACACTGTRMGATCCTT |
87 |
|
L11 |
RPL11exCR |
reverse |
CCCARRTCGATGTGYTCCTG |
65 |
R |
L17 |
RPL17exAF |
forward |
GAGWCMGCTCAGGCCATCAA |
132 |
|
L17 |
RPL17exBR |
reverse |
TCGGCRCTCTTCTTRGGCCA |
8 |
S |
L24 |
RPL24exBF |
forward |
AGMCGCAARCACAAGAAGGG |
13 |
|
L24 |
RPL24exCR |
reverse |
ACYTCAGGCTTCTGRTTCCT |
85 |
*Number of nucleotides between 3’-end of the primers and start or end of the target introns |