Probe |
Tm (°C) |
Probe Sequence |
5' Mod. |
3’ Mod. |
Exon18 ON |
71 |
5’GGTTGATCTTTTTGAATTCAGTTTCCTTCAAGATCCTCCC 3’ |
FAM |
BHQ-1 |
Exon18 OFF |
65 |
5’ CGGAGCCCAGCACT 3’ |
BHQ-1 |
BHQ-1 |
Exon18 ON |
69 |
5’ CAAAGAGAGCTTGGTTGGGAGCTTTG 3’ |
BHQ-1 |
FAM |
Exon18 ON |
59 |
5’ GGCTCCACTGGGTGTAAGCC 3’ |
BHQ-1 |
FAM |
Exon18 OFF |
61 |
5’ AGGCTCCACAAGCTG 3’ |
BHQ-1 |
C3 |
Exon19 ON |
69 |
5’ GGACCTTCTGGGATCCAGAGTCCCCC 3’ |
Cal-Red |
BHQ-2 |
Exon19 OFF |
62 |
5’ ACGGGAATTTTAACTTTCTC 3’ |
- |
BHQ-2 |
Exon19 ON |
59 |
5’ CCGCTTTCGGAGATGTTGCTTGG 3’ |
BHQ-2 |
Cal-Red |
Exon19 OFF |
57 |
5’ CTCTTAATTTCTTGATAGCG 3’ |
BHQ-2 |
BHQ-2 |
Exon19 ON |
62 |
5’ TTATCGAGGATTTCCTTGTTGGAA 3’ |
BHQ-2 |
Cal-Red |
Exon20 ON |
59 |
5’ GCAGATACCCAGTAGGCGG 3’ |
Quasar |
BHQ-2 |
Exon20 OFF |
55 |
5’ CTGCATGGTGAAGGTGAG 3’ |
BHQ-2 |
BHQ-2 |
Exon20 OFF |
64 |
5’ GCATGAGCCGCGTGATGAG 3’ |
BHQ-2 |
BHQ-2 |
Exon20 ON |
69 |
5’ CCAGGGGGCAGCCGAAGG 3’ |
BHQ-2 |
Quasar |
Exon21 OFF |
50 |
5’ CCAGCATTATGGCTCGCCC 3’ |
BHQ 1 |
C3 |
Exon21 ON |
70 |
5’TTAAAATCTGTGATCTTGGCATGCTGCGGTGAA 3’ |
Cal-Or. |
BHQ-1 |
Exon21 ON |
56 |
5’ TTTTTGTCTCCCCCTGCATGGTATTCTTAA 3’ |
BHQ-1 |
Cal-Or. |
Exon21 OFF |
44 |
5’ TCTCTTCTGTACCC 3’ |
BHQ-1 |
C3 |
Exon21 ON |
59 |
5’ CCACGGTCCCCCAAGTAGTTTATGCCGG 3’ |
Cal-Or. |
BHQ-1 |
Exon21 OFF |
42 |
5’ CTAGGTCTTGGTGGATTGAGCG 3’ |
BHQ-1 |
BHQ-1 |
Exon21 ON |
55 |
5’ CCCACCAGTATGTTCCTGGTTGGG 3’ |
BHQ-1 |
Cal-Or. |
Abbreviations: BHQ-1, Black Hole Quencher 1; BHQ-2, Black Hole Quencher 2; C3, C3 spacer linker; Cal-Red, Cal-Red 510; Quasar, Quasar 610; Cal-Or., Cal Orange 560