Sample
Sanger Sequencing Results
cobas
KRAS
Test Results
454 Sequencing Results (% Mutation)
Concordance After
454 Resolution
Lot 1
Lot 2
cobas
KRAS
Test
Lot 1
cobas
KRAS
Test
Lot 2
1
codon 12
NMD
NMD
NMD (<1%)
Yes
Yes
2
codon 12
NMD
NMD
NMD (<1%)
Yes
Yes
3
codon 12
NMD
NMD
NMD (<1%)
Yes
Yes
4
codon 12
NMD
NMD
NMD (<1%)
Yes
Yes
5
codon 12
NMD
NMD
NMD (<1%)
Yes
Yes
6
codons 12 & 61
codon 12/13
codon 12/13
codon 12 (23.7%)
Yes
Yes
7
NMD
codon 12/13
codon 12/13
codon 12 (59.2%)
Yes
Yes
8
NMD
codon 12/13
codon 12/13
codon 12 (13.3%)
Yes
Yes
9
NMD
codon 12/13
codon 12/13
codon 12 (4.9%)
Yes
Yes
10
NMD
codon 12/13
codon 12/13
codon 12 (9.7%)
Yes
Yes
11
NMD
codon 12/13
codon 12/13
codon 12 (39.3%)
Yes
Yes
12
NMD
codon 12/13
codon 12/13
codon 12 (3.0%)
Yes
Yes
13
NMD
NMD
codon 12/13
codon 12 (1.2%)
No
Yes
14
NMD
NMD
codon 12/13
codon 12 (3.7%)
No
Yes
15
NMD
codon 61
codon 61
codon 59 (2.8%)
No
No
16
NMD
NMD
invalid
codon 13 (1.8%)
No
N/A
NMD
, no mutation detected
Table 4:
Resolution of discordant results by 454 sequencing for method correlation