Syndromic regions incidence critical genes
1p36 deletion syndrome 1/5,000 /
1q41q42 microdeletion syndrome unknown DISP1
2p15-16.1 microdeletion syndrome unknown BCL11A 
2q23.1 microdeletion syndrome unknown MBD5, EPC2
2q33.1 deletion (Glass syndrome) unknown STAB2
2q37 deletion syndrome <1/10,000 HDAC4
3pter-p25 deletion syndrome unknown CNTN4, ITPR1, SRGAP3, VHL
3q29 deletion/duplication syndrome unknown FBXO45, PAK2, DLG1
4p16.3 deletion syndrome (Wolf-Hirschhorn) 1/20,000 - 1/50,000 LETM1, WHSC1 
4q21 deletion syndrome unknown PRKG2, RASGEF1B
5p deletion syndrome (Cri du chat) 1/20,000 – 1/50,000 CTNND2, TERT
5q14.3 deletion syndrome unknown MEF2C
5q35 deletion syndrome (Sotos) 1-9/100,000 NSD1
6q13-q14 deletion syndrome unkown COL12A1
7q11.23 deletion syndrome (Williams-Beuren) 1/10,000 ELN
8p23.1 deletion syndrome unknown GATA4 
8q21.11 Microdeletion Syndrome    unknown ZFHX4, PEX2
8q24.1 deletion syndrome (Langer-Giedion) unknown TRPS1,  EXT1
9q34.3 deletion syndrome (Kleefstra) unknown EHMT1
10p14p13 deletion syndrome (DiGeorge type 2) unknown GATA3
11p13 deletion syndrome (WAGR) unknown PAX6, WT1
11p11.2 deletion syndrome (Potocki-Shaffer) unknown ALX4
11q deletion syndrome (Jacobsen) 1/100,000 /
14q12 microdeletion syndrome unknown FOXG1
15q11q13 deletion syndrome (Prader-Willi) 1/25,000 SNRPN
15q11q13 deletion syndrome (Angelman) 1/10,000 - 1/20,000 UBE3A
15q24 deletion/duplication syndrome  unknown /
16p deletion syndrome (ATR-16) unknown HBA1, HBA2
16q24.1 micorodeletion syndrome unknown FOXF1, FOXC2
17p13.3 deletion syndrome (Miller dieker) unknown PAFAH1B1, YWHAE
17p11.2 deletion syndrome (Smith-Magenis) 1/25,000 RAI1
17p11.2 duplication syndrome (Potocki Lupski) unkown RAI1
17q11.2deletion/duplication syndrome unkown NF1, SUZ12
17q21.31 deletion syndrome (Koolen-De Vries) 1/16,000 KANSL1
17q23.1-q23.2 deletion syndrome unknown TBX2, TBX4
19q13.11 deletion syndrome unknown LSM14A, UBA2
Down Sndrome critical region (21q22.12q22.2) 1/650 - 1,000 /
22 partial tetrasomy (Cat eye) 1/50,000 - 1/150,000 /
22q11.2 deletion syndrome (DiGeorge) 1/2,000 – 1/4,000 HIRA, TBX1
22q11.2 distal deletion syndrome    unknown MAPK1
Xp11.3 deletion syndrome unknown RP2
Xp11.22 microduplication syndrome unknown HUWE1
Xq12 deletion/duplication (OPHN1) unknown OPHN1
Xq22.3 deletion syndrome (AMME COMPLEX) unknown COL4A5, ACS4  
Xq28 duplication syndrome unknown MECP2
Table 1: List of syndromic regions selected to be covered by EasyChip