MHC
ALLELE
Rank Sequence Residue
No.
Peptide
Score
I-Ab 1 PSIKDLQRE 39 0.967
I-Ab 2 NTLTNDKRV 61 0.815
I-Ab 3 LTLGVNTLT 56 0.560
I-Ab 4 MLLTLGVNT 54 0.534
I-Ad 1 LSAMLLTLG 51 0.726
I-Ad 2 GAHFCGAMM 3 0.570
I-Ad 3 GIGAHFCGA 1 0.504
I-Ad 4 MAINDINGP 11 0.465
I-Ag7 1 INTAENIAC 23 1.564
I-Ag7 2 EINTAENIA 22 1.461
I-Ag7 3 FCGAMMAIN 6 1.246
I-Ag7 4 GIGAHFCGA 1 1.198
RT1.B 1 TEINTAENI 21 0.660
RT1.B 2 VEALSAMLL 48 0.586
RT1.B 3 TLTNDKRVL 62 0.365
RT1.B 4 TAENIACRA 25 0.250
Table 2: SVM based prediction of promiscuous MHC class II binding peptides from antigen protein.