Primers/probes Primer sequence (5´- 3´)
MSD1-rev tatgaataattttatataccacagccaatttgttatgttgaaccatcc
MSD2-rev tcttaaacctaccaagcctcctactatcattatgaataattttat
MSD3-rev ctgctgcagtcaattcactatagaaagtacagcaaaaactattcttaaacctaccaagc
E1-for gcgggatccacgagcatgacactaacagtgcaggcacgccaactactatctttgactagcctccagatt
Hyb3-for cgggatccagcactatgggcgcagcgtcagtgacgctgacggtacag
Hyb4-for cgggatccttaggagcagcaggaagcactatgggcgcagcg
Hyb5-for cgggatccctgttccttgggttcttaggagcagcaggaagc
Hyb6-for cgggatccgcagcgataggagctctgttccttgggttctta
gp41-for ccagatctgcagtgggaataggagctttgttccttggg
gp41-rev cctgagctgcagataccacagccaatttgttatg
CHR-for gaagatctatggagtgggacagagaaattaac
CHR-rev cctgagctgcagataccacagccaatttgttatg
hGAPDH-for ggcgatgctggcgctgagtac
hGAPDH-rev tggtccacacccatgacga
hGAPDH-probe Hex-ttcaccaccatggagaaggctggg-BHQ-1
68i ggarcagciggaagcaciatgg
69i ccccagacigtgagiticaaca
HIV-1-probe FAM-tccgctgggccatcctggaggctc-BHQ-1
T7-prom taatacgactcactataggg
Table 1: Primers and probes used for the generation of constructs and for real time PCR.