| Causative organism | Estimated frequency | 
      
        | Gram-Positive Bacteria Staphylococcus species (S. aureus, S. epidermidis)
 Streptococcus species (S. pyogenes, S. pneumoniae)
 | 35-40% | 
      
        | Gram-Negative Bacteria Campylobacter jejuni
 Klebsiella species
 Haemophilus influenzae
 Salmonella species
 Escherichia coli (facultative anaerobe)
 Pseudomonas aeruginosa
 Acinetobacter and many others
 | 25% | 
      
        | Anaerobes (Gram-positive and -negative) Bacteroides species
 Actinomyces species
 Clostridium septicum among others
 | 9-12% (Often polymicrobial culture)
 | 
      
        | Mycobacteria Mycobacterium tuberculosis
 Atypical mycobacteria (e.g. Mycobacterium    avium intracellulare)
 | 9% | 
      
        | Fungal Pneumocystis jiroveci
 Aspergillus species
 Candida species
 Blastomyces dermatitidis
 Coccidioides immitis
 | Approx 15% | 
      
        | Parasite Echinococcus species, and others
 | Less than 1% | 
      
        | Polymicrobial culture | 25- 30% |